DRSC/TRiP Functional Genomics Resources

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Protein Alignment RtGEF and arhgef40

DIOPT Version :10

Sequence 1:NP_001097184.2 Gene:RtGEF / 35306 FlyBaseID:FBgn0015803 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_002934340.3 Gene:arhgef40 / 100498627 XenbaseID:XB-GENE-6050452 Length:1449 Species:Xenopus tropicalis


Alignment Length:967 Identity:185/967 - (19%)
Similarity:305/967 - (31%) Gaps:329/967 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 LTSAPLMKKVHQA----YCAAHPKAIVILDKYKDELEKYMERQGAATPGLLVLTTGLSKPFRRLD 212
            :||..|:.....|    ||.            :|::|.:.|  ||.:|    |...|::      
 Frog   217 ITSGDLVDPSVNAHLSLYCG------------QDDIEVWEE--GAVSP----LMDSLAR------ 257

  Fly   213 KYSAMLQELE-RHMESSHP-----DRGDTQRSVAVYKDIAATCSATRRQKELELQVLTGPVRGWQ 271
               ::::.:| .::|.|.|     ::.::||...|.:   |..:.:|:.|:...|....|.|..:
 Frog   258 ---SVIECMEGEYVELSPPQKVVAEKQESQRDTWVSR---AKTAPSRKGKKKGNQAWLHPRRPAK 316

  Fly   272 GQELSTL----GDI-IHMGSVAVGADHRDRYFVLFPQTLLFLSVSQRMSAFIYEGK--LPLTGII 329
            ...||||    .|| .....:.|..|.|:             |:.:..|.:..:..  ...|.::
 Frog   317 VGSLSTLKGKSQDIWKEQSCIGVSQDQRE-------------SLGEEQSYWEVDTTKCSNETDLL 368

  Fly   330 VNRLEDTDALKNAFEISSPLIDRIVAVCQGPNEANKWVELLNANNPSLPMGIKRQLSNLSNSSLG 394
            |...:..|.|:...|..|. .:|.|.:   .::|:.||      :....:..::|:|....    
 Frog   369 VEWRKGVDILQRHGENGSH-SERQVWI---TSDAHAWV------SQDCTLACEKQISGTER---- 419

  Fly   395 HLNAAHLSQHLDSRGYCTRFSLCAY----------YSSPPCHVRPLRVTLPPSNYPATAPYANLS 449
                             |.|..|..          .||.......:||.||....|     ||:|
 Frog   420 -----------------TAFESCLQEEEILSKMLEQSSLKRDTSEVRVDLPCIENP-----ANIS 462

  Fly   450 AHFARLVKGGGLRSAIVKMLLYPQARQSIDLKRI---ALRKRR--CHKASAKL-KDLNTNQDSGQ 508
            |...|.:....|::.:       :..||..|:.|   .|.|.:  |...:::| ...|.||....
 Frog   463 ADSQREISRDSLQNPV-------EENQSETLQAIQRDILDKCQSDCPLDNSRLFLTENKNQVGTP 520

  Fly   509 SELERQDAIELPTDSESYDDDFEDDFLHSCDSDPF---EYVQFYQNKRNDSMCNSTGTFVDHGTG 570
            .|:.....:.||....::.|..|.......:..|.   |::.....:::.:....|.|....|.|
 Frog   521 EEISVSHGLSLPRRERTWADGQETSKEQLGEESPAPSDEFILISVKEKHSTWAQITETPHKTGRG 585

  Fly   571 ARRHCSSINL------IKLDSADTDEVLALNELKKESLVIGSRALRALARKSTTRNSSVHTSTAT 629
            .|:..:....      :|..:..|.:  :..:||||    |:.::.....:...|||......:.
 Frog   586 RRKKRNKRGRGPMKAEVKKGAQKTGQ--SKVDLKKE----GTESVYKADDREEKRNSEERLDQSD 644

  Fly   630 LELGVGGSITNCVEEEPILKV--KPSFSLQQQSSDASSIFA-------------------ARLGG 673
            || ..|..|.:..|:...|::  :|:.||.|......::.|                   ...||
 Frog   645 LE-ETGPPIISQAEDLSCLELCTEPNISLSQIPVPQGNLIAEFKCLYKDINWDVLELGIFCLTGG 708

  Fly   674 --------AFTACENLASM--------------------------------------PDDL---- 688
                    ..|:.|.|:|.                                      ||.|    
 Frog   709 QDKDKRALVITSPEKLSSAHNQKDLVHALLYLYSLLRPELRDLGMTLMLDLRDSTGPPDILLQIL 773

  Fly   689 -SRESSIQ------------EPPTPLPAS----------PTE------RHSMPTIFVGNR-FNHS 723
             ..:.||:            |...|:|..          |||      ...:|..|.|.| :.|.
 Frog   774 QESQDSIRSCINRVLVICATESTNPIPCDIPNIQVLAVLPTELAQFVALKELPEKFGGERPYVHM 838

  Fly   724 KNTEVY-------------------------VPTWRDRQEMQNQSVDAKQ----DEELHSSSID- 758
            .:..:.                         ..:.:|.|.:..|..||.:    ||.|.....| 
 Frog   839 DSMNIQRSLVNLYSLCSDVLQSLESVTLSLDADSSQDNQSLIFQHRDAMKSALTDERLQRLQRDG 903

  Fly   759 --LPAACLSAP-----DKLQAELLYNYDEILEKPLQLHRELTPFPGHNLNSDKRVSHKSDSPSTG 816
              |.|....:|     |.:..:|....||.|.:.:||             |:|::.......|..
 Frog   904 GTLVARLQKSPYLRLCDPVIFDLYERVDEALHQLVQL-------------SNKKLQELEARISPQ 955

  Fly   817 NAKTDPNLATRSSSTTELCIDTTSKKRTTPSERSRDSIRRCISYQFLQMSNR--------PP--- 870
            :.: |..|..||:..:|..:.....:|.....|.|.          |::|:|        ||   
 Frog   956 DYR-DQTLVLRSAEESEFPVTEPESRRIEVGVRIRG----------LEVSSRELADRTCSPPRGH 1009

  Fly   871 -----------------PPPPPRRDPD-LHLDTKCRCCENSQCPSPRSSDSGMAGSC 909
                             |.|..||.|. |.||  ..|.|.|...|.|.| ..:.|||
 Frog  1010 VLSRGDGRGPDAPWGGIPRPEGRRSPQRLLLD--LLCSERSYVQSMRRS-LEVRGSC 1063

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RtGEFNP_001097184.2 SH3_PIX 6..58 CDD:212810
RhoGEF 79..249 CDD:238091 22/106 (21%)
PH_Cool_Pix 281..376 CDD:269932 17/97 (18%)
arhgef40XP_002934340.3 CRAL_TRIO 701..831 CDD:459890 19/129 (15%)
RhoGEF 1036..1191 CDD:470622 12/31 (39%)
PH-like 1194..1319 CDD:473070
Blue background indicates that the domain is not in the aligned region.

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