DRSC/TRiP Functional Genomics Resources

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Protein Alignment RtGEF and vav3

DIOPT Version :10

Sequence 1:NP_001097184.2 Gene:RtGEF / 35306 FlyBaseID:FBgn0015803 Length:1310 Species:Drosophila melanogaster
Sequence 2:XP_012817964.1 Gene:vav3 / 100493918 XenbaseID:XB-GENE-6075609 Length:864 Species:Xenopus tropicalis


Alignment Length:540 Identity:114/540 - (21%)
Similarity:192/540 - (35%) Gaps:120/540 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 NDELCFQKGDVITVTQREDGGWWEGTLNDKTGWFPSNYVNECKVQLPLTETIRPPEEIQ-EYRSV 81
            :|||.:.     .|.|.::||                   |....|...|...|....: :.||.
 Frog   156 DDELYYD-----CVYQEDEGG-------------------EVYEDLMKAEAALPNRSAESDVRSC 196

  Fly    82 VLKDLLDSERAHVAELQGLLENFLEPMQQTQILSQDEYAQLMCNFVEIVRTHEDLLIQIEE-CND 145
            .|.::..:|..:...|..:.:.|:||::  ..|:..:..::..|..|:|..|.:|:.||:: .|.
 Frog   197 CLLEIKQTEEKYSETLDSIEKFFMEPLK--NFLAPTDMQKVFINIPEMVEVHRNLVNQIKDSVNH 259

  Fly   146 RVGK----LFLTSAPLMKKVHQAYCAAHPKAIVILD---KYKDELE-KYMERQGAATPGLLVLTT 202
            |..:    :|||....: .::..||:....||.:||   |.::::. |..|....|..|...|..
 Frog   260 RNSQNLYMIFLTYKERL-LIYGEYCSQVELAISVLDNISKTREDVRLKLEECSKRANNGKFTLRD 323

  Fly   203 GLSKPFRRLDKYSAMLQELERHMESSHP-DRGDTQRSVAVYKDIAATCSATRRQKEL--ELQVLT 264
            .|..|.:|:.||..:||||.:|  ::.| ::.:.:.::...||:|...:..:|..|.  |::...
 Frog   324 LLVVPMQRVLKYHLLLQELVKH--TTDPTEKNNLRVALDAMKDLAQYVNEVKRDTETLREIEQYQ 386

  Fly   265 GPVRGWQGQELSTLGDIIHMGSVAVGA-DHR---DRYFVLFPQTLLFLSVSQRMSAFIYEGKLPL 325
            ..:.. ..|.:|..|.....|.:.:.. |.|   |||..||.|.:                    
 Frog   387 HSIEN-LNQPMSQYGRPKIDGEIRISTLDKRARQDRYIFLFDQAV-------------------- 430

  Fly   326 TGIIVNRLEDTDALKNAFEISSPLIDRIVAVCQGPNEANKWVELLNANNPSLPMGIKRQLSNLSN 390
              |:..|..|...:|...::....|                     .||||.....|:.      
 Frog   431 --IVCKRRGDNYDMKEIIDLQKYKI---------------------TNNPSTDKENKKW------ 466

  Fly   391 SSLGHLNAAHLSQHLDSRGYC----TRFSLCAYYSSPPCHVRPLRVTLPPSNYPATAPYANLSAH 451
             |.| ....|:........:|    .:..|...:.....::|       |.|  |||.|.....|
 Frog   467 -SYG-FYLTHIQGQNGFEFFCKTKDLKKKLLEQFEMALSNIR-------PDN--ATANYHEFQMH 520

  Fly   452 FARLVKGGGLRSAIVKMLLYPQARQSIDLKRIALRKRRCHKASAKLKDLNTNQDSGQSELERQDA 516
            ..:.|..    ..:.:|||.....|....::..   ...||......|.....|||..:.|:|:.
 Frog   521 SFKSVTS----CRVCQMLLRGTFFQGYLCQKCG---TGAHKECLGRVDTCRRADSGTLKHEKQNG 578

  Fly   517 IELPTDSESYDDDFEDDFLH 536
            ...|.  ::.|.|.....||
 Frog   579 PRRPV--KNPDPDVFSISLH 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RtGEFNP_001097184.2 SH3_PIX 6..58 CDD:212810 7/39 (18%)
RhoGEF 79..249 CDD:238091 47/179 (26%)
PH_Cool_Pix 281..376 CDD:269932 16/98 (16%)
vav3XP_012817964.1 CH_VAV3 2..118 CDD:409113
RhoGEF 194..370 CDD:238091 47/180 (26%)
PH_Vav 384..507 CDD:269930 28/181 (15%)
C1_VAV3 507..565 CDD:410419 15/66 (23%)
SH3_VAV3_1 613..674 CDD:212914
SH2_Vav3 683..785 CDD:198270
SH3_VAV3_2 808..863 CDD:212911
Blue background indicates that the domain is not in the aligned region.

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