DRSC/TRiP Functional Genomics Resources

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Protein Alignment La and LARP1a

DIOPT Version :10

Sequence 1:NP_477014.1 Gene:La / 35305 FlyBaseID:FBgn0011638 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001190354.1 Gene:LARP1a / 832242 AraportID:AT5G21160 Length:833 Species:Arabidopsis thaliana


Alignment Length:357 Identity:65/357 - (18%)
Similarity:139/357 - (38%) Gaps:94/357 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLV 118
            :::||||||.|.||..|.:|...:  :|:||||..::..|||:.:::.|:..||.||..|..  |
plant   282 VLKQVEYYFSDENLENDHYLISLM--DEEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNS--V 342

  Fly   119 EISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFA-ANYDKVVNLTMRK 182
            |:..|                     :|::|..::...|...:.:...... .:.|...::|...
plant   343 EVQGD---------------------QIRKRDKWSDWIPASKKSTSAETIGDGDKDSPKSITSGD 386

  Fly   183 HYDKPTK---------------------SYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELLRK 226
            ::..|:|                     :|| .|::          |:..::::.|   .:|...
plant   387 NFGNPSKGSSKPTVSDFSSEGAQSSRTNNYK-SGNL----------KSSADEKRNV---EDLSND 437

  Fly   227 WQVDYLKEKQEEYAQKNEKRKNKKEAKPEPAFELPKNAIVVFEGAPETSSREEIREAFEKIKDFE 291
            :...:|.:::.:...::.::.....:|.           :.:|........::|:         :
plant   438 FSNTFLLDEELDLEHRSPRKSGLSMSKS-----------IEYEDDDMAVDDQDIQ---------K 482

  Fly   292 VAYIEFAKGETKGS-VRLTEADAAEKYIAK-VEEGKLKFKDEVSLSLRKATEEEEKEFIDKAIEF 354
            :..:....|::.|: :..|||....|.:|. :.:|...|:.|  |..:::...:....:|     
plant   483 LVIVTQNSGKSDGAGIGGTEAKNIPKELASTINDGLYYFEQE--LKKKRSGRRKNNSHLD----- 540

  Fly   355 MKKRRDFTRNKGKRFNRKRHGGNDHKHGGGKK 386
               .:|.....|:..|.|. |.|...:.||::
plant   541 ---TKDGKIKSGEGLNTKL-GENSAANDGGEE 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaNP_477014.1 LARP_3 47..129 CDD:153397 28/74 (38%)
RRM1_La 150..226 CDD:409733 11/97 (11%)
RRM2_La 263..338 CDD:409957 13/76 (17%)
LARP1aNP_001190354.1 PHA03247 <52..268 CDD:223021
LAM 279..351 CDD:153396 29/93 (31%)
DM15 670..710 CDD:128927
DM15 712..749 CDD:128927
DM15 750..785 CDD:128927
Blue background indicates that the domain is not in the aligned region.

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