Protein Alignment La and LARP6c

DIOPT Version :9

• Sequence 1: NP_477014.1
• Gene: La / 35305
• FlyBaseID: FBgn0011638
• Length: 390
• Species: Drosophila melanogaster
• Sequence 2: NP_001325674.1
• Gene: LARP6c / 821444
• AraportID: AT3G19090
• Length: 482
• Species: Arabidopsis thaliana
• Alignment Length: 421
• Identity: 83/421 - (19%)
• Similarity: 157/421 - (37%)
• Gaps: 112/421 - (26%)

  Fly     8 PSVEAQEEVAQPAEAQVLEAKNGDAKKDPA---PAAEEAAGGFTKQ------ERAIIRQVEYYFG 63
            |:.:.| .|..||.|..:        .:||   ||::.::.. :|.      ...|::||||.|.
plant   103 PTAQHQ-HVHDPAAAFYI--------SNPAVQFPASQNSSSS-SKNLLSDDLRLKIVKQVEYQFT 157

  Fly    64 DANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLR 128
            |.:|..::.:.:.|.|:.:|:||:|.:.:.|::.:|:::...:..||..|.:  :.:|||...::
plant   158 DMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRSSSK--LVVSEDGKKVK 220

  Fly   129 RHPERPIPEHNEERRKE---------------------------IQERTAYAKGFPLDSQISELL 166
            |     ..:..:..|:|                           :|.||..|:..|.|....
plant   221 R-----TSQFTDRDREELQVNLNITKASLYLLSTIYEFLLLFTVLQGRTVVAENLPDDHSYQ--- 277

  Fly   167 DFAANYDKVVNL-----TMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELLRK 226
                |.:|:..:     .:|..:...:.|.:.||...::    ::..|.:|.:..|..::.:
plant   278 ----NLEKIFGVVGNVKAIRICHPPESNSSRPKGDFLMS----NKIHALIEYDNTVIADKAV--- 331

  Fly   227 WQVDYLKEKQEEYAQKNEKRKNKK--------EAKPEPAFELPKN--AIVVFEGAP-----ETSS 276
                   ||      .|::|..:|        ...|:...:..:|  .|::.:..|     |.|.
plant   332 -------EK------LNDERNWRKGLRVRLLLRCSPKSVLKNRRNFDGILIDDELPSYESGEDSP 383

  Fly   277 REEIREA-FEKIKDFEVAYIEFAKGETKGSVRLTEADAAEKYIAKVEEGKLKFKDEVSLSL---- 336
            |..:.|: .:...|.......:.||..||..|...:.|       |..|...|...:.:||
plant   384 RLHLTESQLDNDGDDNNVGGLWGKGRGKGRGRSPRSYA-------VGGGGRSFGIGLGVSLGIPS 441

  Fly   337 RKATEEEEKEFIDKAIEFMKKRRDFTRNKGK 367
            ..:.|....:...|........|.||..:||
plant   442 LGSHESSSPKTATKGPRMPDGTRGFTMGRGK 472

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
La	NP_477014.1	LARP_3	47..129	CDD:153397	23/87 (26%)
		RRM1_La	150..226	CDD:240737	13/80 (16%)
		RRM_SF	263..338	CDD:302621	19/86 (22%)
LARP6c	NP_001325674.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1665
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.910