DRSC/TRiP Functional Genomics Resources

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Protein Alignment La and LARP6b

DIOPT Version :9

Sequence 1:NP_477014.1 Gene:La / 35305 FlyBaseID:FBgn0011638 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_566004.1 Gene:LARP6b / 819002 AraportID:AT2G43970 Length:545 Species:Arabidopsis thaliana


Alignment Length:384 Identity:81/384 - (21%)
Similarity:151/384 - (39%) Gaps:85/384 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EAKNGDAKKDPAPAAEEAAGGFTKQE-RAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSV 89
            |:||....:..|..:.::..|..:.. :.|:.||||||.|.||.....|...|.|:.:|:||:.|
plant   168 ESKNDQVTETGASVSIDSKTGLPEDSIQKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHV 232

  Fly    90 LVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAK 154
            :.:||::.::..:.|::.|.|..|.:  :.:|||...:||     |....|...:|:|.|...|:
plant   233 VASFKKIKAVINNNSQLAAVLQNSAK--LFVSEDGKKVRR-----ISPITESAIEELQSRIIVAE 290

  Fly   155 GFPLDSQISELLDFAANYDKVVNLTMRKHYDKPT-------KSYKFKGSIFLTFETKDQAKAFLE 212
            ..|.|.....|:...:....|.|:...:..:..:       .:.|..|::|     .::..||:|
plant   291 NLPEDHCYQNLMKIFSTVGSVKNIRTCQPQNNGSGAPPAARSAAKSDGTLF-----SNKVHAFVE 350

  Fly   213 QEKIVYKERELLR-----KW----QVDYLKEKQEEYAQKNEKRKNKKEAKPEPAFELPKNAIVVF 268
            .|.:...||.:..     .|    :|..:.:.|.:..::.:.|..|..           :|.|..
plant   351 YEIVELAERAVTELSEAGNWRSGLKVRLMLKHQTKEPKQGQGRGRKGH-----------DADVEH 404

  Fly   269 EGAPETSSREEIREAFEKIKDFEVAYIEFAKGETKGSVRLTEADAAEKYIAKVEEGKLKFKDEVS 333
            |....|:|.:   :..||..|                      |.:.::...::|          
plant   405 EEDDATTSEQ---QPIEKQSD----------------------DCSGEWDTHMQE---------- 434

  Fly   334 LSLRKATEEEEKEFIDKAIEFMKKRRDFTRNKGK---RFNRKRHGGNDHKHGGGKKARG 389
               :...|::..|   ||.. .:|.|:..|.||:   :.::.::..|:|.|.......|
plant   435 ---QPIGEDQGNE---KAAG-QRKGRNRGRGKGRGRGQPHQNQNQNNNHSHNQNHNHNG 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaNP_477014.1 LARP_3 47..129 CDD:153397 26/82 (32%)
RRM1_La 150..226 CDD:240737 15/87 (17%)
RRM_SF 263..338 CDD:302621 10/74 (14%)
LARP6bNP_566004.1 LARP_6 194..270 CDD:153402 26/77 (34%)
RRM_La_like_plant 285..380 CDD:240734 18/99 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1665
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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