Protein Alignment La and larp6-like.1

DIOPT Version :9

• Sequence 1: NP_477014.1
• Gene: La / 35305
• FlyBaseID: FBgn0011638
• Length: 390
• Species: Drosophila melanogaster
• Sequence 2: NP_001072636.1
• Gene: larp6-like.1 / 780092
• XenbaseID: XB-GENE-5806148
• Length: 481
• Species: Xenopus tropicalis
• Alignment Length: 309
• Identity: 65/309 - (21%)
• Similarity: 122/309 - (39%)
• Gaps: 84/309 - (27%)

  Fly    49 KQERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
            |..|.|:.|||:|..|.||:.|.||.:.:.||:.|:|.:.:|.:||::..|:.|..:.:.||..|
 Frog    78 KLVRKIVSQVEFYLSDENLSHDAFLLKHVQKNKMGYVSIKLLTSFKKIKYLTRDWRKTLYALRFS 142

  Fly   114 EEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQI-------SELLDFAAN 171
            |:  :|::|::..:||  :.|:|:              |..|.|...|:       .|...|:..
 Frog   143 EQ--LEVNEEETKVRR--KNPLPD--------------YLLGLPPTKQLLVWNISDPEKRSFSCQ 189

  Fly   172 YDKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKEREL---LRKWQVDYLK 233
            ...::.:..               |:|.|:       ..:...:|:...:|:   :||:...|
 Frog   190 QKNLMEIVT---------------SVFATY-------GLITSIRILKPGKEVPSDIRKYMSRY-- 230

  Fly   234 EKQEEYAQKNEKRKNKKEAKPEPAFELPKNAIVVFEGAPETSSREEIREAFE----KIKDFEVAY 294
                                  |.......|:|.:|      |.|..|:|.|    |:....:..
 Frog   231 ----------------------PELSTRNCALVEYE------SLEGARKALEALSGKVSSTNIDR 267

  Fly   295 IEFAKGETKGSVRLTEADAAEKYIAKVEEGKLKFKDEVSLSLRKATEEE 343
            |:......:|:.:....|.||:....:.:.|:..|:..::...:.|.|:
 Frog   268 IKVIPVSGRGTRKKNVIDTAEQEDLDLPDKKMTRKEIRAMERLQYTTED 316

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
La	NP_477014.1	LARP_3	47..129	CDD:153397	28/79 (35%)
		RRM1_La	150..226	CDD:240737	11/85 (13%)
		RRM_SF	263..338	CDD:302621	16/78 (21%)
larp6-like.1	NP_001072636.1	LARP_6	80..156	CDD:153402	27/77 (35%)
		RRM_LARP6	171..274	CDD:240735	22/154 (14%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910