DRSC/TRiP Functional Genomics Resources

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Protein Alignment La and Larp7

DIOPT Version :10

Sequence 1:NP_477014.1 Gene:La / 35305 FlyBaseID:FBgn0011638 Length:390 Species:Drosophila melanogaster
Sequence 2:XP_038959070.1 Gene:Larp7 / 686883 RGDID:1592474 Length:578 Species:Rattus norvegicus


Alignment Length:425 Identity:121/425 - (28%)
Similarity:193/425 - (45%) Gaps:97/425 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EVAETPSVEAQEEVAQPAEAQVLEAKNGDAKKDPAPAAEEAAGGFTKQERAIIRQVEYYFGDANL 67
            ||......|.|:.:.:..|      |..:.||..:...:..|.        |.:||:::||||||
  Rat     2 EVLRKMETENQKTMEESTE------KRKEEKKKRSRVKQVLAD--------IAKQVDFWFGDANL 52

  Fly    68 NRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPE 132
            ::|:||||||.|:.||:|.:|:||:|.::..|:||...|..||..|  .:||:..:...:||  :
  Rat    53 HKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSS--SVVELDLEGTRIRR--K 113

  Fly   133 RPIPEHNEERRKEIQERTAYAKGFPLD---SQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFK 194
            :|:    .||.|:.:|||.|.:..|.:   |.|..:.....|   ||.::: .|| |.|...  |
  Rat   114 KPL----GERPKDEEERTVYVELLPKNVTHSWIERVFGKCGN---VVYISI-PHY-KSTGDP--K 167

  Fly   195 GSIFLTFETKDQAKAFLE-----QEKIVYKE---RELLRKWQVDYLKEKQEEYAQKNEKRKNKKE 251
            |..|:.||||:||...:|     .|:...|.   .:.::...:..|:..:|:..:|.:|.:.|||
  Rat   168 GFAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIPSLRVAEEKKKKKKKKGRIKKE 232

  Fly   252 AKPE--------------PAFELPKNAIVVFEGAPETSSREEIREAFEKIKDFEVAYIEFAKGET 302
            ...:              .|.:.|:.|   .||: |..:.|..::..:|.|..:       |.||
  Rat   233 ESVQAKELVVDSSSSGVSKATKRPRTA---SEGS-EAETPEAPKQPAKKKKKRD-------KVET 286

  Fly   303 KGSVRLTEADAAEKYIAKVEE-------GKLKFK----------DEVS---LSLRKATEEEEKEF 347
            .|   |.|:.|.::..:..|:       .|||.:          .|||   ..|...:.|||||.
  Rat   287 GG---LPESKAGKRERSSAEDEDCLPPRPKLKKRAQKDGGGPAASEVSKEHRDLEFCSTEEEKEP 348

  Fly   348 IDKAIEFMKKRRDFTRNKGKRFNRKRHGGNDHKHG 382
            .|        |:..:.:||||.::|:| ...||.|
  Rat   349 GD--------RKGDSLSKGKRKHKKKH-KERHKMG 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaNP_477014.1 LARP_3 47..129 CDD:153397 33/81 (41%)
RRM1_La 150..226 CDD:409733 24/86 (28%)
RRM2_La 263..338 CDD:409957 22/94 (23%)
Larp7XP_038959070.1 LARP_7 32..112 CDD:153401 34/89 (38%)
RRM1_LARP7 127..206 CDD:409732 24/85 (28%)
RRM2_LARP7 450..531 CDD:409958
Blue background indicates that the domain is not in the aligned region.

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