Protein Alignment La and Ssbl1

DIOPT Version :10

• Sequence 1: NP_477014.1
• Gene: La / 35305
• FlyBaseID: FBgn0011638
• Length: 390
• Species: Drosophila melanogaster
• Sequence 2: XP_038964967.1
• Gene: Ssbl1 / 680385
• RGDID: 1592944
• Length: 402
• Species: Rattus norvegicus
• Alignment Length: 379
• Identity: 123/379 - (32%)
• Similarity: 198/379 - (52%)
• Gaps: 39/379 - (10%)

  Fly    27 AKNGDAKKDPAPAAEEAAGGFTKQERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLV 91
            |:|||.:|   .||.||         .|..|:||||||.||.:||||:||| |.::|||.|..::
  Rat     2 AENGDNEK---MAALEA---------KICHQIEYYFGDFNLPQDKFLKEQI-KLDEGWVSLETMI 53

  Fly    92 TFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGF 156
            .|.||..|:||.:.||.||:||:..|:|:|.||..:||.|.||:||..:|.:.:::.|:.|.|||
  Rat    54 KFNRLNRLTTDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVMDEYKNDVKNRSVYIKGF 118

  Fly   157 PLDSQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKER 221
            |.|:.:.::.::..:..:::|:.||:...|     .||||||..|::...||.|::.....||:.
  Rat   119 PTDATLDDIKEWLDDKGQILNIQMRRKLHK-----TFKGSIFAVFDSIQSAKKFVDTPGQKYKDT 178

  Fly   222 ELLRKWQVDYLKEKQEEYAQKNE----KRKNKKEAKPEP------AFELPKNAIVVFEG-APETS 275
            .||..::.||..:|.||..|...    |.|.:.|.:.:|      |.|.....::.|.| ..:.:
  Rat   179 NLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGDLDDQT 243

  Fly   276 SREEIREAFEKIKDFEVAYIEFAKGETKGSVRLTE--ADAAEKYIAKVEEGKLKFKDEVSLSLRK 338
            .||::...|.  ...|:.:|:|.:|..:|.:...|  .|..|| ......|.|..::: .::.:.
  Rat   244 CREDLHFLFS--NHGEIKWIDFVRGAKEGIILFKEKAKDTLEK-ARSANNGNLLLRNK-KMTWKV 304

  Fly   339 ATEEEEKEFIDKAIEFMKKRRDFTRNKG---KRFNRKRHGGNDHKHGGGKKARG 389
            .....||:.:.|..:..::..:..::||   :|| :.|..||...:.|..|.||
  Rat   305 LEGHAEKDAMKKITDDQQESLNKWKSKGGHVRRF-KGRGKGNRPAYAGAPKGRG 357

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
La	NP_477014.1	LARP_3	47..129	CDD:153397	39/81 (48%)
		RRM1_La	150..226	CDD:409733	24/75 (32%)
		RRM2_La	263..338	CDD:409957	16/77 (21%)
Ssbl1	XP_038964967.1	LARP_3	10..91	CDD:153397	43/90 (48%)
		RRM1_La	112..183	CDD:409733	24/75 (32%)
		RRM2_La	230..306	CDD:409957	16/79 (20%)