DRSC/TRiP Functional Genomics Resources

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Protein Alignment La and LOC680385

DIOPT Version :9

Sequence 1:NP_477014.1 Gene:La / 35305 FlyBaseID:FBgn0011638 Length:390 Species:Drosophila melanogaster
Sequence 2:XP_038964967.1 Gene:LOC680385 / 680385 RGDID:1592944 Length:402 Species:Rattus norvegicus


Alignment Length:379 Identity:123/379 - (32%)
Similarity:198/379 - (52%) Gaps:39/379 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 AKNGDAKKDPAPAAEEAAGGFTKQERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLV 91
            |:|||.:|   .||.||         .|..|:||||||.||.:||||:||| |.::|||.|..::
  Rat     2 AENGDNEK---MAALEA---------KICHQIEYYFGDFNLPQDKFLKEQI-KLDEGWVSLETMI 53

  Fly    92 TFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGF 156
            .|.||..|:||.:.||.||:||:..|:|:|.||..:||.|.||:||..:|.:.:::.|:.|.|||
  Rat    54 KFNRLNRLTTDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVMDEYKNDVKNRSVYIKGF 118

  Fly   157 PLDSQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKER 221
            |.|:.:.::.::..:..:::|:.||:...|     .||||||..|::...||.|::.....||:.
  Rat   119 PTDATLDDIKEWLDDKGQILNIQMRRKLHK-----TFKGSIFAVFDSIQSAKKFVDTPGQKYKDT 178

  Fly   222 ELLRKWQVDYLKEKQEEYAQKNE----KRKNKKEAKPEP------AFELPKNAIVVFEG-APETS 275
            .||..::.||..:|.||..|...    |.|.:.|.:.:|      |.|.....::.|.| ..:.:
  Rat   179 NLLILFKEDYFAKKNEERKQSKVEAKLKAKQEHEGRHKPGSTETRALEGKMGCLLKFSGDLDDQT 243

  Fly   276 SREEIREAFEKIKDFEVAYIEFAKGETKGSVRLTE--ADAAEKYIAKVEEGKLKFKDEVSLSLRK 338
            .||::...|.  ...|:.:|:|.:|..:|.:...|  .|..|| ......|.|..::: .::.:.
  Rat   244 CREDLHFLFS--NHGEIKWIDFVRGAKEGIILFKEKAKDTLEK-ARSANNGNLLLRNK-KMTWKV 304

  Fly   339 ATEEEEKEFIDKAIEFMKKRRDFTRNKG---KRFNRKRHGGNDHKHGGGKKARG 389
            .....||:.:.|..:..::..:..::||   :|| :.|..||...:.|..|.||
  Rat   305 LEGHAEKDAMKKITDDQQESLNKWKSKGGHVRRF-KGRGKGNRPAYAGAPKGRG 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaNP_477014.1 LARP_3 47..129 CDD:153397 39/81 (48%)
RRM1_La 150..226 CDD:240737 24/75 (32%)
RRM_SF 263..338 CDD:302621 16/77 (21%)
LOC680385XP_038964967.1 LARP_3 10..91 CDD:153397 43/90 (48%)
RRM1_La 112..183 CDD:409733 24/75 (32%)
RRM2_La 230..306 CDD:409957 16/79 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349380
Domainoid 1 1.000 70 1.000 Domainoid score I9328
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 176 1.000 Inparanoid score I3945
OMA 1 1.010 - - QHG54025
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002882
OrthoInspector 1 1.000 - - otm45327
orthoMCL 1 0.900 - - OOG6_102594
Panther 1 1.100 - - O PTHR22792
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1665
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.900

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