DRSC/TRiP Functional Genomics Resources

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Protein Alignment La and SSB

DIOPT Version :10

Sequence 1:NP_477014.1 Gene:La / 35305 FlyBaseID:FBgn0011638 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_003133.1 Gene:SSB / 6741 HGNCID:11316 Length:408 Species:Homo sapiens


Alignment Length:385 Identity:138/385 - (35%)
Similarity:208/385 - (54%) Gaps:60/385 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 AKNGDAKKDPAPAAEEAAGGFTKQERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLV 91
            |:|||.:|   .||.||         .|..|:||||||.||.|||||:||| |.::|||||.:::
Human     2 AENGDNEK---MAALEA---------KICHQIEYYFGDFNLPRDKFLKEQI-KLDEGWVPLEIMI 53

  Fly    92 TFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGF 156
            .|.||..|:||.:.||.||:||:..|:||||||..:||.|.:|:||..:|.:.:::.|:.|.|||
Human    54 KFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGF 118

  Fly   157 PLDSQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKER 221
            |.|:.:.::.::..:..:|:|:.||:...|     .||||||:.|::.:.||.|:|.....|||.
Human   119 PTDATLDDIKEWLEDKGQVLNIQMRRTLHK-----AFKGSIFVVFDSIESAKKFVETPGQKYKET 178

  Fly   222 ELLRKWQVDYLKEKQEEYAQKNEKRK-NKKEAK------PEPAFELPKNA-----------IVVF 268
            :||..::.||       :|:|||:|| ||.|||      .|...:|.::|           ::.|
Human   179 DLLILFKDDY-------FAKKNEERKQNKVEAKLRAKQEQEAKQKLEEDAEMKSLEEKIGCLLKF 236

  Fly   269 EG-APETSSREEIREAFEKIKDFEVAYIEFAKGETKGSVRLTEADAAEKYIAKVEEGKLKFKDEV 332
            .| ..:.:.||::...|.  ...|:.:|:|.:|..:|.:...|.       ||...||.|..:..
Human   237 SGDLDDQTCREDLHILFS--NHGEIKWIDFVRGAKEGIILFKEK-------AKEALGKAKDANNG 292

  Fly   333 SLSLRK-------ATEEEEKEFIDKAIEFMKKRRDFTRNKGKRFNRKRHGGNDHKHGGGK 385
            :|.||.       ...|.|||.:.|.||..::..:..::||:||..|..|....:.|.||
Human   293 NLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKGRRFKGKGKGNKAAQPGSGK 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaNP_477014.1 LARP_3 47..129 CDD:153397 43/81 (53%)
RRM1_La 150..226 CDD:409733 27/75 (36%)
RRM2_La 263..338 CDD:409957 19/86 (22%)
SSBNP_003133.1 LARP_3 10..91 CDD:153397 47/90 (52%)
RRM1_La 112..183 CDD:409733 27/75 (36%)
RRM_3 231..334 CDD:400913 27/111 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 329..408 9/24 (38%)

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