DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment La and Larp7

DIOPT Version :9

Sequence 1:NP_477014.1 Gene:La / 35305 FlyBaseID:FBgn0011638 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_524795.2 Gene:Larp7 / 44900 FlyBaseID:FBgn0260771 Length:595 Species:Drosophila melanogaster


Alignment Length:424 Identity:108/424 - (25%)
Similarity:191/424 - (45%) Gaps:97/424 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AEVAETPSVEAQEEVAQPAEAQVLEAKNGDAKKDPAP--AAEEAAGGFTKQER----AIIRQVEY 60
            |..||.|...|..|   |||         :..|:|||  |:.:...|..|::|    :|..|:|:
  Fly    17 ATSAEKPDPAAPTE---PAE---------ENSKEPAPEDASPDKKDGGRKRKRHLFNSIRGQMEF 69

  Fly    61 YFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKL 125
            |||||||::|:|||..:  .:|.:|||.:.:||.::.:|:.|:.:|..||:.|:  |:|:.|.:|
  Fly    70 YFGDANLSKDRFLRRYV--EQDPYVPLEIFLTFNKIKTLTQDVQQIAKALSNSQ--LLELDETEL 130

  Fly   126 SLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKS 190
            .::|..:.|       .::::.::|.|.:..|.::....|.:..:.|..|..::: .|| ..|| 
  Fly   131 KVKRRTKLP-------DQRDVNDKTLYVEALPANATHDWLKEVFSRYGPVAYVSL-PHY-PGTK- 185

  Fly   191 YKFKGSIFLTFE----TKDQAKAFLEQEKIVYKERE-----LLRKWQVDYLKEKQEEYAQKNEKR 246
             |.|...|:.||    .:...|||.:.:.::..|.:     .:|.:|      :|::..||.|:.
  Fly   186 -KIKEFAFIEFEKSGSLEKAVKAFAQIQGVLSVETDPSDLASVRSFQ------QQQQIQQKAEQP 243

  Fly   247 KNKKEAKPEPAFELPKNAIVVFEGAPETSSREEIREAFEKIKD--FEVAYIEFAKGE-----TKG 304
            :::.|     ..||||              |...|||.:|.::  .||..::..:|:     |.|
  Fly   244 QSEAE-----QVELPK--------------RNLKREATDKDREEIHEVKRVKLEEGQPSETSTAG 289

  Fly   305 SVRLTEADAAEKYIAKVEEGKLKFKDEVSLSLRKATEEEEKEFIDK------AIEF--------- 354
            .. .:|.||.....|..:|.|.:..|....:.::..:.::|..:||      |:|.         
  Fly   290 ET-ASETDAEGTAEASEQEDKTEATDGDEAAKKRRRKRKKKAIVDKPNIEPSALELKVLPKTSWS 353

  Fly   355 -MK------KRRDFTRNKGKRFNRKRHGGNDHKH 381
             |:      :||..:..|.|.:.........|.|
  Fly   354 SMRNKYLNLQRRIVSEAKSKLWRENHPQNQQHPH 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaNP_477014.1 LARP_3 47..129 CDD:153397 32/85 (38%)
RRM1_La 150..226 CDD:240737 19/84 (23%)
RRM_SF 263..338 CDD:302621 17/81 (21%)
Larp7NP_524795.2 LA 57..135 CDD:128955 31/81 (38%)
RRM <116..>208 CDD:223796 25/104 (24%)
RRM1_LARP7 148..>209 CDD:240736 17/64 (27%)
RRM2_LARP7 471..548 CDD:240986
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456177
Domainoid 1 1.000 51 1.000 Domainoid score I3340
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46772
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR22792
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R649
SonicParanoid 00.000 Not matched by this tool.
65.970

Return to query results.
Submit another query.