Protein Alignment La and Larp4B

DIOPT Version :9

• Sequence 1: NP_477014.1
• Gene: La / 35305
• FlyBaseID: FBgn0011638
• Length: 390
• Species: Drosophila melanogaster
• Sequence 2: NP_647793.1
• Gene: Larp4B / 38399
• FlyBaseID: FBgn0035424
• Length: 1531
• Species: Drosophila melanogaster
• Alignment Length: 290
• Identity: 70/290 - (24%)
• Similarity: 105/290 - (36%)
• Gaps: 99/290 - (34%)

  Fly    10 VEAQEEVAQPAEAQVLEAKNGDAKKDPAPAAEEAAGG------FTKQERAIIRQVEYYFGDANLN 68
            |..|..|..|...|:  ..||.|  ||...:..||||      ..|.::.:..|:||||...||.
  Fly   226 VPVQVPVQVPVPVQL--PANGSA--DPQQGSHNAAGGEEPNIPLDKLKQMLATQLEYYFSRENLA 286

  Fly    69 RDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPER 133
            .|.:|..|:  :.|.:||:..:..|..:..|:.|::.|...|.:|.    .:..|...||..|.|
  Fly   287 NDTYLLSQM--DSDQYVPIYTVARFNLVRKLTNDINLITEVLRESP----NVQVDDKGLRVRPNR 345

  Fly   134 PIPEHNEERR-----KEIQERTAYAKGFPLDSQISELL-----------DFAANYDKVVNLTMRK 182
                    :|     :||...|      ||| .:..|.           :||||
  Fly   346 --------KRCIIILREISNNT------PLD-DVKALFSNESCPRPISCEFAAN----------- 384

  Fly   183 HYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKNEKRK 247
                        .|.::|||:.:.|:.       .||           ||:|:.:|:
  Fly   385 ------------NSWYITFESDEDAQK-------AYK-----------YLREEVKEF-------- 411

  Fly   248 NKKEAKPEPAFELPKNAIVVFEGAPETSSR 277
               :.||..|...||:.|...:..|:...|
  Fly   412 ---QGKPIMARIKPKSFINRIQAVPKNGYR 438

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
La	NP_477014.1	LARP_3	47..129	CDD:153397	22/81 (27%)
		RRM1_La	150..226	CDD:240737	16/86 (19%)
		RRM_SF	263..338	CDD:302621	3/15 (20%)
Larp4B	NP_647793.1	LARP_4_5_like	269..343	CDD:153400	22/79 (28%)
		RRM_LARP4_5_like	348..423	CDD:240876	25/133 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45456182
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR22792
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.940