DRSC/TRiP Functional Genomics Resources

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Protein Alignment La and larp6a

DIOPT Version :10

Sequence 1:NP_477014.1 Gene:La / 35305 FlyBaseID:FBgn0011638 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_956197.1 Gene:larp6a / 334471 ZFINID:ZDB-GENE-030131-6403 Length:485 Species:Danio rerio


Alignment Length:256 Identity:62/256 - (24%)
Similarity:112/256 - (43%) Gaps:38/256 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AEVAETPSVEAQEEVAQPAE---AQVLEAKNGDAKKDPAPAAEEA-----AGGFTKQE------- 51
            |.|..|.:::|.||..:|.|   ...:|.:.|...:|.....:::     :||..::|       
Zfish    12 APVTITVAIQAAEEDDEPDEEPSCNTIELQTGSGSEDELGRHDKSSGAGTSGGELEEESWQPPDP 76

  Fly    52 ---RAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKS 113
               :.::.|:|||..|.||..|.||.:.:.:|:.|:|.:.:|.:||::..|:.|......||..|
Zfish    77 ELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTRDWRTTAYALRHS 141

  Fly   114 EEGLVEISEDKLSLRRHPERPI--PEHNEERRKEIQERTAYAK-GFPL--DS----------QIS 163
              .|:|::::...:||....|:  .|....|...:.|...:.: |..|  ||          ::.
Zfish   142 --NLLELNDEGRKVRRRSTVPVFASESLPSRMLLLSELKRWPELGIALGGDSNNGSGPTQQERLM 204

  Fly   164 ELLDFA-ANYDKVVNL-TMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERE 222
            |||..| .||..:.:: .::...|.|....|..|. :....|::.|....|:.:...|..|
Zfish   205 ELLLKAFGNYGPIASVRVLKPGKDLPADLKKLSGR-YSQLGTEECAIVEFEEVEAAMKAHE 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaNP_477014.1 LARP_3 47..129 CDD:153397 24/91 (26%)
RRM1_La 150..226 CDD:409733 19/88 (22%)
RRM2_La 263..338 CDD:409957
larp6aNP_956197.1 LARP_6 79..155 CDD:153402 23/77 (30%)
RRM_LARP6 170..284 CDD:409731 21/96 (22%)
SUZ-C 441..473 CDD:463745
Blue background indicates that the domain is not in the aligned region.

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