Protein Alignment La and ssb

DIOPT Version :10

• Sequence 1: NP_477014.1
• Gene: La / 35305
• FlyBaseID: FBgn0011638
• Length: 390
• Species: Drosophila melanogaster
• Sequence 2: XP_073808680.1
• Gene: ssb / 321504
• ZFINID: ZDB-GENE-030131-223
• Length: 485
• Species: Danio rerio
• Alignment Length: 367
• Identity: 127/367 - (34%)
• Similarity: 206/367 - (56%)
• Gaps: 41/367 - (11%)

  Fly    51 ERAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEE 115
            |:.:..|:||||||.||.|||||:||: :.:||||||..::.|.||.||:::.|.||.:|.||:.
Zfish    95 EKKVAEQIEYYFGDHNLPRDKFLKEQL-QLDDGWVPLETMLKFNRLKSLTSEESVIVESLLKSKT 158

  Fly   116 GLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTM 180
            ||:||||||..:||.|.:|:||:|||.|..::.::.|.|||||::.:.::.::.|:.....|:.:
Zfish   159 GLLEISEDKTKIRRDPNKPLPENNEEYRDALKHKSIYMKGFPLETTLDDVKEWLADKGTFENIYL 223

  Fly   181 RKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIV-YKERELLRKWQVDYLKEKQEEYAQ--- 241
            ||   .|.|:  ||||||...||::.||||:|::.|. :|..|::...:..|..:|..|..|
Zfish   224 RK---GPQKT--FKGSIFAVLETEEAAKAFVERDDIKNFKGNEMIVMMKDAYFTKKIAERKQNRV 283

  Fly   242 ------KNEKRKNKKEAKPEPAFEL--PKNAIVVFEGAPETSSREEIREAFEKIKDFEVAYIEFA 298
                  |.:|.:.:|:|:.|....|  .:..::.|.|....:|||:....|.  ...::.:|:|.
Zfish   284 ESKAKAKCDKEEKQKQAEEEEMKSLNEQRGCLLKFSGELGQTSREDFHSVFS--DHAQIKWIDFT 346

  Fly   299 KGETKGSVRLTEADAAEKYIAKV------EEGKLK--------FKDEVSLSLRKATEEEEKEFID 349
            :|..:|:: |..::|.|. :.||      |:.|:|        .:.:|.:...|...|:::|.|:
Zfish   347 RGAKEGTI-LFHSNAKEA-LQKVREALNGEDPKVKEQAVQWEILEGDVEMETLKKIIEDQQESIN 409

  Fly   350 KAIEFMKKRRDFTRNKGK-RFNRKRHGGNDHKHGGGKKARGD 390
            |    .|..|...|.:|: |..|:..||.:|....|||.:.|
Zfish   410 K----RKGGRGGFRGRGRGRGGRRDRGGREHTQFKGKKTKFD 447

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
La	NP_477014.1	LARP_3	47..129	CDD:153397	42/77 (55%)
		RRM1_La	150..226	CDD:409733	28/76 (37%)
		RRM2_La	263..338	CDD:409957	19/88 (22%)
ssb	XP_073808680.1	None