DRSC/TRiP Functional Genomics Resources

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Protein Alignment La and Larp6

DIOPT Version :10

Sequence 1:NP_477014.1 Gene:La / 35305 FlyBaseID:FBgn0011638 Length:390 Species:Drosophila melanogaster
Sequence 2:NP_001101624.1 Gene:Larp6 / 315731 RGDID:1308414 Length:492 Species:Rattus norvegicus


Alignment Length:418 Identity:89/418 - (21%)
Similarity:151/418 - (36%) Gaps:149/418 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VAETPSVEAQEEVAQPAEAQVLEAKNGDAKKDPAP----AAEE----------AAGGFTKQE--- 51
            :.|...||..||..:...|:..    ||..:..:|    |:||          .:||...:|   
  Rat    22 IQEAEDVEDLEEDDEGTSARAA----GDTARYLSPGWGSASEEEPSRGHSSATTSGGENDREDLE 82

  Fly    52 -----------RAIIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSE 105
                       |.::.|:|:||.|.||.:|.||.:.:.:|:.|:|.:.:|.:||::..|:.|...
  Rat    83 PEWKPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRT 147

  Fly   106 IVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFAA 170
            ...||..|.  .:|::||...:||  ..|:|.                  ||.::..|::|   .
  Rat   148 TAHALKYSV--TLELNEDHRKVRR--TTPVPL------------------FPNENLPSKML---L 187

  Fly   171 NYD-----KVVNLTMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELLRKWQVD 230
            .||     |:.:|.      .|.|:    |.:               |||:            ::
  Rat   188 VYDLHLSPKLWSLA------TPPKN----GRV---------------QEKV------------ME 215

  Fly   231 YLKEKQEEYAQKNEKRKNKKEAKPEPAFELPKNAIVVFEGAPETSSREEIREAFEKIKDFEVAYI 295
            ||.:....:...:..|..|      |..|||.:.             ..|...:.::...|.|.:
  Rat   216 YLLKLFGTFGVISSVRILK------PGRELPPDI-------------RRISSRYSQVGTQECAIV 261

  Fly   296 EFAKGETKGSVRLTEADAAEK---YIAKVEEGKLKFKDEVSLSLRKATEEEEKEFIDKAIEFMKK 357
            ||           .|.|||.|   ::|...:||...| .|.:.:|...::..|:         |.
  Rat   262 EF-----------EEVDAAIKAHEFMATESQGKENMK-AVLIGMRPPKKKPLKD---------KN 305

  Fly   358 RRD-------FTRNKGKRFNRKRHGGND 378
            ..|       .:|:..||....::.|::
  Rat   306 HEDEPAAGTRLSRSLNKRVEELQYMGDE 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LaNP_477014.1 LARP_3 47..129 CDD:153397 26/95 (27%)
RRM1_La 150..226 CDD:409733 14/80 (18%)
RRM2_La 263..338 CDD:409957 15/77 (19%)
Larp6NP_001101624.1 LARP_6 93..169 CDD:153402 25/77 (32%)
RRM_LARP6 184..292 CDD:409731 34/178 (19%)
SUZ-C 452..482 CDD:463745
Blue background indicates that the domain is not in the aligned region.

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