Sequence 1: | NP_477014.1 | Gene: | La / 35305 | FlyBaseID: | FBgn0011638 | Length: | 390 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038943133.1 | Gene: | Larp1 / 303158 | RGDID: | 1306683 | Length: | 1073 | Species: | Rattus norvegicus |
Alignment Length: | 364 | Identity: | 80/364 - (21%) |
---|---|---|---|
Similarity: | 149/364 - (40%) | Gaps: | 101/364 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 54 IIRQVEYYFGDANLNRDKFLREQIGKNEDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLV 118
Fly 119 EISEDKLSLRRHPER-PIPEHNEERRKEIQERTAYAKGFPLDSQISELLDFA-ANYDKVVN---L 178
Fly 179 TMRKHYDKPTKSYKFKGSIFLTFETKDQAKAFLEQEKIVYKERELLRKWQVDYLKEKQEEYAQKN 243
Fly 244 EKRKNKKEAKP----EPAF--------ELPKNAIVVFEGAPETSSREEIREAF------------ 284
Fly 285 ------EKIKDFEV---------------AYIEFAKGETKGSVRLTEADAAEKYIAKVEEGKLKF 328
Fly 329 KDEVSLSLRKATEEEEKEF--IDKAIEFMKKRRDFTRNK 365 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
La | NP_477014.1 | LARP_3 | 47..129 | CDD:153397 | 32/74 (43%) |
RRM1_La | 150..226 | CDD:240737 | 14/79 (18%) | ||
RRM_SF | 263..338 | CDD:302621 | 9/107 (8%) | ||
Larp1 | XP_038943133.1 | PHA03247 | <95..291 | CDD:223021 | |
LHP1 | <368..534 | CDD:227520 | 53/189 (28%) | ||
LARP_1_2 | 380..452 | CDD:153403 | 32/72 (44%) | ||
DM15 | 863..903 | CDD:128927 | |||
DM15 | 904..942 | CDD:128927 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.000 |