DRSC/TRiP Functional Genomics Resources

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Protein Alignment nesd and Shcbp1l

DIOPT Version :9

Sequence 1:NP_610025.1 Gene:nesd / 35298 FlyBaseID:FBgn0032848 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001028334.1 Gene:Shcbp1l / 71836 MGIID:1919086 Length:639 Species:Mus musculus


Alignment Length:614 Identity:132/614 - (21%)
Similarity:229/614 - (37%) Gaps:180/614 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LERLKEAEAVLSWEGAVMPASQVRSEWKSYVEL---KIEPAGWQAIWKIPRVICEDLKLRYPTIV 72
            ||:||..:   .|.|.          |||..||   |.|.|....:..:..|.|:..:       
Mouse   134 LEKLKAKD---RWLGV----------WKSNPELFFEKYEEASIPFVGILVEVTCKPRQ------- 178

  Fly    73 YGYVEQVIFDELKAVFVVTAVQDSDVHLPESNEVS-------------------LVELWPTVQQE 118
                      .|.:.|.||.    .|..|.|:.::                   |:|::|...|:
Mouse   179 ----------NLSSCFKVTV----SVAEPFSSNIANIPRDLVDEVLGELEYSAPLLEVYPVDGQD 229

  Fly   119 NAALNVDTTAECIDRLRFFYTHVWMPWDKDYDDDRDWVQQHLQARIQLVCDLSKNRLPRPLALHM 183
               .:|...|..::.:||||..:|..|| |.::..::... ::.||.|.||:....:|.|:|...
Mouse   230 ---ADVRDIALALEVVRFFYDFLWRDWD-DEENCENYTAL-IEERINLWCDIQDGTIPGPIAQRF 289

  Fly   184 RTLLAEAKYIQQRLDYLELDLSDAESDDEAVELNDSVAEPARKQSKAGSANGCLNVSSLPVTDLM 248
            :..|  .||..:|::.:|.. |:.:.|..|.|    ..|..:|..:.....|.|.         |
Mouse   290 KKTL--EKYKNKRVELIEYQ-SNIKEDPSAAE----AVECWKKYYEIVMLCGLLK---------M 338

  Fly   249 CLHLRMAIIRSEF-EILENPEMRRAYSELQSNSLKRLRCSSGRTRQSEDLLVERNSISHVVTLPG 312
            ...||:.:....| .||...:.:|.:               |:|            |:|:|.   
Mouse   339 WEDLRLRVHGPFFPRILRRRKGKRDF---------------GKT------------ITHIVA--- 373

  Fly   313 KLQQQLELLKLAQT-LVK---PESKVQLSNTLQDVLSICQSNDDILLSPGEHTIKFLEHLNDNGS 373
                     |:..| :||   .::.:|..|.|...|..|.|.|.:::.|||:....|..|.|:.:
Mouse   374 ---------KVMTTDMVKNLSSDTLLQQHNDLNLALDSCYSGDIVVIFPGEYQASNLALLTDDIT 429

  Fly   374 LRGLTQPEAILSPAADLSLLPVVCSSDEDSTLLVIDGDYTLSELVLDCRHVRRG-----ILLRNG 433
            ::|:.:.|.|:          :......||.::....:..|.:|.|    :::|     :::.:|
Mouse   430 IKGVGKREEIM----------ITSEPSHDSFVVSKADNVKLMQLSL----IQQGTVDGIVVVESG 480

  Fly   434 TLTMRGCRLLGDGSSSTQEGIVCMPGASVELKSCLIENF-AVGVSMRPKSSAELGSVQFKTCKTG 497
            .||:..|.|..:|:     |:..:.|||:.:.:..|... ..||.:.|.|.|.|...:...| ..
Mouse   481 HLTLENCLLKCEGT-----GVCVLTGASLTITNSEITGAQGAGVELYPGSIAILEGNEIHHC-NN 539

  Fly   498 LELLEKSAS----VNLQ---------GSKCSFENCALGI----------------LADGFVLGEQ 533
            |...:.|.|    ||::         .:...:.|...|:                |..|...|::
Mouse   540 LRTSDSSKSTLGGVNMKVLPAPKLKMTNNHIYNNNGYGVSILQPSEQFFIVAEAALNKGAASGDK 604

  Fly   534 RTEKVL--VLNKFSELQRYN--EDNLLGN 558
            :.:|:|  |:...:.....|  |.||.|:
Mouse   605 KDDKMLSKVMQTLNVEMNNNRIEANLKGD 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nesdNP_610025.1 None
Shcbp1lNP_001028334.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..75
Beta_helix 472..>580 CDD:289971 25/113 (22%)
PbH1 1 479..500 7/25 (28%)
Beta_helix 495..>639 CDD:289971 30/140 (21%)
PbH1 2 501..523 6/21 (29%)
PbH1 3 524..557 9/33 (27%)
PbH1 4 560..582 2/21 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 104 1.000 Inparanoid score I4931
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005693
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14695
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
66.020

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