DRSC/TRiP Functional Genomics Resources

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Protein Alignment neb and FRA1

DIOPT Version :10

Sequence 1:NP_476817.1 Gene:neb / 35293 FlyBaseID:FBgn0004374 Length:1121 Species:Drosophila melanogaster
Sequence 2:NP_199593.2 Gene:FRA1 / 834833 AraportID:AT5G47820 Length:1035 Species:Arabidopsis thaliana


Alignment Length:986 Identity:273/986 - (27%)
Similarity:424/986 - (43%) Gaps:268/986 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 EESNMIVAVRVRPLNALECTRGQVTNVVQVHGNSNELTVQAGSSADASAGVTHFFSYDQVYYSCD 181
            ::.::.|||.:|||...|..:|....|..|.|...   ||.||         |.|::|.||.|  
plant     8 DDCSVKVAVHIRPLIGDERIQGCQDCVTVVTGKPQ---VQIGS---------HSFTFDHVYGS-- 58

  Fly   182 PERKNFACQAKVFEGTARPLIDTAFEGYNACLFAYGQTGSGKSYSMMGIEALDDAALDGGPPHDE 246
                :.:...:::|..|.||:|..|:||||.:.|||||||||:|: ||....|.:         :
plant    59 ----SGSPSTEMYEECAAPLVDGLFQGYNATVLAYGQTGSGKTYT-MGTGCGDSS---------Q 109

  Fly   247 AGIIPRFCHELFRRIEAVKSQQQLQVEVEVSYFEIYNEKIHDLLS--------------VQHAAA 297
            .||||:..:.||.:||.:|  ||::.::.||:.||:.|::.|||.              |...|.
plant   110 TGIIPQVMNALFTKIETLK--QQIEFQIHVSFIEIHKEEVQDLLDPCTVNKSDTNNTGHVGKVAH 172

  Fly   298 ATGESTPIQQQQQQQRPALKVREHPIFGPYVVDLSAHSVDSYSALRNWLAV---GNSQRATASTA 359
            ..|            :|.:::||   ....|:.|:..:..|.|.|:...|.   |:..|||.||.
plant   173 VPG------------KPPIQIRE---TSNGVITLAGSTEVSVSTLKEMAACLDQGSVSRATGSTN 222

  Fly   360 MNDKSSRSHSIFNI-VLNLTDLSSDDGLSSDTDSSTASSLRQTRRSKISLVDLAGSERISVSGSN 423
            ||::|||||:||.| |..:..:::|   |.:..:...|...:...:|:.|||||||||...:||:
plant   223 MNNQSSRSHAIFTITVEQMRKINTD---SPENGAYNGSLKEEYLCAKLHLVDLAGSERAKRTGSD 284

  Fly   424 GERIREGVSINKSLLTLGKVIAALADSRKAIANGPLGSGTPSTFVPYRESVLTWLLRENLGGNSK 488
            |.|.:|||.|||.||.||.||:||.|.:|.         .....||||:|.||.||:::|||||:
plant   285 GLRFKEGVHINKGLLALGNVISALGDEKKR---------KDGAHVPYRDSKLTRLLQDSLGGNSR 340

  Fly   489 TVMLATISPASIHADETLATLRYACKARSIVNRVKVNESPHDKIIRDLRAEVDRLKSLRNEYERQ 553
            |||:|.||||.|:|:|||.||:||.:||:|.|:..||..|....:..:|.:|:.|::     |..
plant   341 TVMIACISPADINAEETLNTLKYANRARNIRNKPVVNRDPVSSEMLKMRQQVEYLQA-----ELS 400

  Fly   554 RRLSGNSNNPVPRKIIIETSVDETEVEALRQQLAERERELSRAQKSWMEKLKEAEDQRKSELRVL 618
            .|..|:|.               .||:||::::.            |:|   .|.::...||...
plant   401 LRTGGSSC---------------AEVQALKERIV------------WLE---TANEELCRELHEY 435

  Fly   619 KRR--GLALELTAEQKQACLVNLTADPILSGTLFYLLPQGLVRIGRGRLPGGSSSSQPDIVL--- 678
            :.|  |:      |..:....::.||.|:..    :.|.||.|    .|....||:.|.:..   
plant   436 RSRCPGV------EHSEKDFKDIRADDIVGS----VRPDGLKR----SLHSIESSNYPMVEATTG 486

  Fly   679 DGPLVALQHCSIEHERGGKLYVIPGSEDFETYVNGELLKDRR---QLFHGDRLVIGGSHYFRISN 740
            |...:..:....||:      ::..|.|.|.|.....|:::.   :||.|........|:     
plant   487 DSREIDEEAKEWEHK------LLQNSMDKELYELNRRLEEKESEMKLFDGYDPAALKQHF----- 540

  Fly   741 PFCSQRGKADHPVDFQLAHQEILQKQEQQLRSELEAE-----KRAALTKIEQERAQHARDFEERL 800
                  ||       ::|..|..::..|:.|:.|.||     ......|::...||:.:..|.::
plant   541 ------GK-------KIAEVEDEKRSVQEERNRLLAEIENLASDGQAQKLQDVHAQNLKALEAQI 592

  Fly   801 QCLELEQFKYKCNSEMLETERQALALAQQQEHTPLRHEDAV-STPAQKSTILEDIQRIMLNPSEE 864
            ..|:.:|          |::.|.|...|:.:....|.:|.: |..|||         :.|.    
plant   593 LDLKKKQ----------ESQVQLLKQKQKSDDAARRLQDEIQSIKAQK---------VQLQ---- 634

  Fly   865 SLHKTQLMVKEATQRCRQLDLPLEFRQTQTPDEFGLLRTVILILDKQRGLKAEWPTARLGVWLDL 929
              |:   |.:||.|          |||.:...|..||:.      ::.|.|:|:           
plant   635 --HR---MKQEAEQ----------FRQWKASREKELLQL------RKEGRKSEY----------- 667

  Fly   930 VRDNAEQQEKLNATTIFQSVEVDWEPLDADLNETLSDTHNSSRIALNLSAMKDVLLNKPLKRLLN 994
                  ::.||.|                 ||:       ..::.|.....:..:..|.||.||.
plant   668 ------ERHKLQA-----------------LNQ-------RQKMVLQRKTEEAAMATKRLKELLE 702

  Fly   995 ASSSKSNTPRQTSTPSPGSQLVHFTKRLLTYDPEEIPESQSSFTTLVQQELQIM-----QRSAQR 1054
            |   :.::||:.|..:.|     |.....|        ::.|....:..||::|     .|....
plant   703 A---RKSSPREHSAGTNG-----FGTNGQT--------NEKSLQRWLDHELEVMVNVHEVRHEYE 751

  Fly  1055 LRRHCEAALLE 1065
            .:.|..|||.|
plant   752 KQSHVRAALAE 762

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nebNP_476817.1 KISc_KIF1A_KIF1B 119..525 CDD:276816 160/423 (38%)
SMC_N 514..>615 CDD:481474 21/100 (21%)
FHA_KIF14 627..741 CDD:438759 24/119 (20%)
FRA1NP_199593.2 KISc_KIF4 10..371 CDD:276823 158/417 (38%)
PRK03918 <384..909 CDD:235175 110/553 (20%)
GumC <480..>705 CDD:442439 64/336 (19%)

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