DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment neb and PAKRP1

DIOPT Version :9

Sequence 1:NP_476817.1 Gene:neb / 35293 FlyBaseID:FBgn0004374 Length:1121 Species:Drosophila melanogaster
Sequence 2:NP_567423.1 Gene:PAKRP1 / 827054 AraportID:AT4G14150 Length:1292 Species:Arabidopsis thaliana


Alignment Length:1295 Identity:305/1295 - (23%)
Similarity:496/1295 - (38%) Gaps:382/1295 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 NTAFSGSTPQPKPKPTALNACYTPSSLYRNANSTPG----RAKTPGTGKSSCSRTKER----DSL 108
            |.:.|.|.|..|.:....||    ..|.|| .|||.    |.|.|...:...|...:|    ::.
plant    23 NPSISKSKPPRKLRSAKENA----PPLDRN-TSTPDHRSMRMKNPLPPRPPPSNPLKRKLSAETA 82

  Fly   109 MESCLSVSEESNMIVAVRVRPLNALECTRGQVTNVVQVHGNSNELTVQAGSSADASAGVTHFFSY 173
            .||..|   :|.:.|.||::|||     :|:..:::....:.:.|||         :|.|  |::
plant    83 TESGFS---DSGVKVIVRMKPLN-----KGEEGDMIVEKMSKDSLTV---------SGQT--FTF 128

  Fly   174 DQVYYSCDPERKNFACQAKVFEGTARPLIDTAFEGYNACLFAYGQTGSGKSYSMMG-IEALDDAA 237
            |.:   .:||    :.|.::|:....||::....|:|:.:||||||||||:|:|.| ...|.:..
plant   129 DSI---ANPE----STQEQMFQLVGAPLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANGLLEEH 186

  Fly   238 LDGGPPHDEAGIIPRFCHELFRRI--EAVK-SQQQLQVEVEVSYFEIYNEKIHDLLSVQHAAAAT 299
            |.|    |:.|:.||....||.||  |.|| :::||..:...|..|||||:|.|||.        
plant   187 LCG----DQRGLTPRVFERLFARIKEEQVKHAERQLNYQCRCSLLEIYNEQITDLLD-------- 239

  Fly   300 GESTPIQQQQQQQRPALKVREHPIFGPYVVDLSAHSVDSYSALRNWLAVGNSQRATASTAMNDKS 364
                |.|:.       |.:||....|.||.:|:...|.:.:.:...|..|...|.|.:|::|.:|
plant   240 ----PSQKN-------LMIREDVKSGVYVENLTEEYVKNLTDVSQLLIKGLGNRRTGATSVNTES 293

  Fly   365 SRSHSIFNIVLNLTDLSSDDGLSSDTDSSTASSLRQTRRSKISLVDLAGSERISVSGSNGERIRE 429
            ||||.:|..|:.....:..|||||            .:.|:|:|||||||||...:|:.|||::|
plant   294 SRSHCVFTCVVESRCKNVADGLSS------------FKTSRINLVDLAGSERQKSTGAAGERLKE 346

  Fly   430 GVSINKSLLTLGKVIAALADSRKAIANGPLGSGTPSTFVPYRESVLTWLLRENLGGNSKTVMLAT 494
            ..:||:||..||.:|..||:..:        :|.| ..:|||:|.||:||:|:||||:|..|:..
plant   347 AGNINRSLSQLGNLINILAEISQ--------TGKP-RHIPYRDSRLTFLLQESLGGNAKLAMVCA 402

  Fly   495 ISPASIHADETLATLRYACKARSIVNRVKVNESPHDKIIRDLRAEVDRLKSLRNEYERQRRLSGN 559
            :||:.....||.:|||:|.:|::|.|:..|||...|. :..||..:.:   ||:|.:|.:....|
plant   403 VSPSQSCRSETFSTLRFAQRAKAIQNKAVVNEVMQDD-VNFLRGVIHQ---LRDELQRMKNDGNN 463

  Fly   560 SNNP-----------------------VPRKI-------IIETSVDETEVEALRQQLAERERELS 594
            ..||                       .||.:       .||..:||..||.|..|:..:....|
plant   464 PTNPNVAYSTAWNARRSLNLLRSFGLGHPRSLPHEDNDGDIEMEIDEAAVERLCVQVGLQSSLAS 528

  Fly   595 RAQKSWMEKLK--EAEDQRKSELRVLKRRGLALE------------------------------- 626
            ......|.::|  .:.|.:..|.|:.:...:|:|                               
plant   529 EGINHDMNRVKSIHSSDGQSIEKRLPEDSDVAMEDACCHTENHEPETVDNMRTETETGIRENQIK 593

  Fly   627 -----------------------------------------------------------LTAEQK 632
                                                                       :.:...
plant   594 THSQTLDHESSFQPLSVKDALCSSLNKSEDVSSCPDLVPQDVTSANVLIADGVDDPEHLVNSASP 658

  Fly   633 QACLVNLTADPILSGTLFYLLPQGLVRIGRGRLPGG--SSSSQPD-----IVLD----GPLVA-- 684
            ..|:..:.|.|:|......:.|  .:|..|..|...  |::||.|     :|.:    .|..:  
plant   659 SLCIDPVGATPVLKSPTLSVSP--TIRNSRKSLKTSELSTASQKDSEGENLVTEAADPSPATSKK 721

  Fly   685 LQHCS------------IEHER-------GGKL-------------------------------- 698
            :.:||            :..||       |.||                                
plant   722 MNNCSSALSTQKSKVFPVRTERLASSLHKGIKLLESYCQSTAQRRSTYRFSFKAPDSEPSTSISK 786

  Fly   699 -----YVIPGSEDFETYVNGELL----KDRRQLFHGDRLVIGGSHYFRISNPFCSQRGKADHPVD 754
                 ..|||::........|.|    |.|.|.   |...:|.....::.            |||
plant   787 ADAGVQTIPGADAISEENTKEFLCCKCKCREQF---DAQQMGDMPNLQLV------------PVD 836

  Fly   755 FQLAHQEILQKQEQQLRSELEAEKRAALTKIEQERAQHARDFEERLQCLELEQFKYKCNSEMLET 819
                :.|:.:|.:.|:...:|   :.....|.:|.|              ||:|..|..||:.:.
plant   837 ----NSEVAEKSKNQVPKAVE---KVLAGSIRREMA--------------LEEFCTKQASEITQL 880

  Fly   820 ERQALALAQQQEHTPLRHEDAV--STPAQKSTILEDIQRIMLNPSE-------ESLHKTQLMVKE 875
            .|    |.||.:|.  |..:|:  .|...|...||.:...:|:..:       ..||:.:|:...
plant   881 NR----LVQQYKHE--RECNAIIGQTREDKIIRLESLMDGVLSKEDFLDEEFASLLHEHKLLKDM 939

  Fly   876 ATQRCRQLDLPLEFRQTQTPDE-----FGLLRTVILILDKQRGLKAEWPTARLGVWLDLVRDNAE 935
            .......|...:|..:||...|     :|.:....::|::.:.||.:     |..::|     ..
plant   940 YQNHPEVLKTKIELERTQEEVENFKNFYGDMGEREVLLEEIQDLKLQ-----LQCYID-----PS 994

  Fly   936 QQEKLNATTI----FQSVEVDWEPLDADLNETLSDTHNSSRIALNLSAMKDVLLNKPLKRLLNAS 996
            .:..|...|:    :|:..|:..|...|  |:|..|....|:....:..|.:.|::.|:..|.||
plant   995 LKSALKTCTLLKLSYQAPPVNAIPESQD--ESLEKTLEQERLCWTEAETKWISLSEELRTELEAS 1057

  Fly   997 SSKSNTPRQTSTPSPGSQLVHFTKRLLTYDPEEIPESQSSFTTLVQQELQIMQRSAQRLRRHCEA 1061
            .:..|..:..         :...||.    .||:.|:..   ..::...:::::.|....:|.: 
plant  1058 KALINKQKHE---------LEIEKRC----GEELKEAMQ---MAMEGHARMLEQYADLEEKHMQ- 1105

  Fly  1062 ALLERENHQDNGVLAVSLQEALARMDTVLNGMHTSLARAEATACVTSPTKTQKAVRFLID 1121
             ||.|.....:|:  ..:::|.||..  :.|..:....|.|........:.:|..::|.|
plant  1106 -LLARHRRIQDGI--DDVKKAAARAG--VRGAESRFINALAAEISALKVEKEKERQYLRD 1160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nebNP_476817.1 KISc_KIF1A_KIF1B 119..525 CDD:276816 143/409 (35%)
KISc 120..525 CDD:214526 142/408 (35%)
Kinesin_assoc 524..657 CDD:292801 36/254 (14%)
FHA 634..740 CDD:238017 31/178 (17%)
PAKRP1NP_567423.1 PLN03188 2..1292 CDD:215621 305/1295 (24%)
Motor_domain 92..434 CDD:277568 143/408 (35%)
Kinesin-relat_1 901..987 CDD:289481 16/90 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 252 1.000 Domainoid score I517
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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