DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment neb and cmet

DIOPT Version :9

Sequence 1:NP_476817.1 Gene:neb / 35293 FlyBaseID:FBgn0004374 Length:1121 Species:Drosophila melanogaster
Sequence 2:NP_524993.3 Gene:cmet / 53561 FlyBaseID:FBgn0040232 Length:2189 Species:Drosophila melanogaster


Alignment Length:1296 Identity:285/1296 - (21%)
Similarity:495/1296 - (38%) Gaps:458/1296 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 LSVSEESNMIVAVRVRPLNALECTRGQVTNVVQV-HGNSNELTVQAGSSADASAGVTHFFSYDQV 176
            :|....|::.|.::|||     |..| :|::.|| ...|..|   |.|.|:.       :.:|.|
  Fly     1 MSAKNASSIQVCIKVRP-----CEPG-LTSLWQVKERRSIHL---ADSHAEP-------YVFDYV 49

  Fly   177 YYSCDPERKNFACQAKVFEGTARPLIDTAFEGYNACLFAYGQTGSGKSYSMMGIEALDDAALDGG 241
            :       ...|...:||:..|:.::....:|:|..:||||||.|||:|:|||.|          
  Fly    50 F-------DEGASNQEVFDRMAKHIVHACMQGFNGTIFAYGQTSSGKTYTMMGDE---------- 97

  Fly   242 PPHDEAGIIPRFCHELFRRIEAVKSQQQLQVEVEVSYFEIYNEKIHDLLSVQHAAAATGESTPIQ 306
               ...|::.....|:|::|   .|:.:....:.|.|.|||||||:|||:               
  Fly    98 ---QNPGVMVLAAKEIFQQI---SSETERDFLLRVGYIEIYNEKIYDLLN--------------- 141

  Fly   307 QQQQQQRPALKVREHPIFGPYVVDLSAHS--VDSYSALRNWLAVGNSQRATASTAMNDKSSRSHS 369
                ::...||:.|.   |..:|:::...  :.|...|...|.:||.:|....|.||::|||||:
  Fly   142 ----KKNQDLKIHES---GNGIVNVNCEECIITSEVDLLRLLCLGNKERTVGETNMNERSSRSHA 199

  Fly   370 IFNIVL--NLTDLSSDDGLSSDTDSSTASSLRQTRRSKISLVDLAGSERISVSGSNGERIREGVS 432
            ||.|::  ..:|.|.||.:.               :|.::|||||||||...:|:.|.|::||..
  Fly   200 IFKIIIESRKSDHSDDDAVI---------------QSVLNLVDLAGSERADQTGARGARLKEGGH 249

  Fly   433 INKSLLTLGKVIAAL---ADSRKAIANGPLGSGTPSTFVPYRESVLTWLLRENLGGNSKTVMLAT 494
            ||||||.|..||.:|   ||:|               |..||:|.||.:|:.:||||:.|.::.|
  Fly   250 INKSLLFLSNVIKSLSENADNR---------------FTNYRDSKLTRILQASLGGNAFTSIICT 299

  Fly   495 ISPASIHADETLATLRYACKARSIVNRVKVNESPHD-----------KIIRDLRAEVDRLK---- 544
            |.|:.:  :|:.:||.:|.:|:.|..:.:|||...|           |:::|..||.:|..    
  Fly   300 IKPSIM--EESQSTLSFATRAKKIRIKPQVNEMVSDATMMKRLEREIKVLKDKLAEEERKNENQQ 362

  Fly   545 --------------------SLRNEYERQRRLS-------------------------------- 557
                                ||.::.:::||.:                                
  Fly   363 KVEHLERQIKHDMHKIICGHSLSDKGQQKRRRTWCPTASGSHLELAETGTTEDRIDQFPKVSHLP 427

  Fly   558 -----------------------------GNSNNPV--------------PRKIIIE-------- 571
                                         |..:|.:              ||..:::        
  Fly   428 KPVFFHTSNAGKRWDNIPKTINILGSLDIGTESNSISEEFLPAECIDFGSPRPDVLKPMLTIRQL 492

  Fly   572 --------------------------TSVDE------TEVEALRQQLAE---------------- 588
                                      ||:::      .||:.|:::|||                
  Fly   493 PDLPLTPKGPLTTDKIKKEIQDLQMFTSLEKHFEVECEEVQGLKEKLAEVTAQRDNLEQESLAEK 557

  Fly   589 -----REREL------SRAQKSWMEKLKEAEDQRKSELRVLKRR-----GLALELTAEQKQACLV 637
                 .|:|:      :.|..|.:.:|:|.....|..:|:::..     ||..|..|.:|.:   
  Fly   558 ERYDALEKEVTSLRADNEAANSKISELEEKLSTLKQTMRIMEVENQVAVGLEFEFEAHKKSS--- 619

  Fly   638 NLTADPILSGTL-----FYLLPQGLVRIGRGRLPGGSSSSQPDIVLDGPLVALQHCSIEHERGGK 697
            .|..|.:||..|     ...|.:.|..:.|            |::.:.            :.|..
  Fly   620 KLRVDDLLSALLEKESTIESLQKSLDNLTR------------DVLRNS------------KEGHM 660

  Fly   698 LYVIPGSEDF--ETYVN--GEL------LKDRRQLFHGDRLVIGGSHYFRISNPFCSQRGKADHP 752
            |.:.|..||.  ::..|  .||      |:.::.....|:|.:          ...|.|.|.:..
  Fly   661 LSIAPEQEDIAGDSICNKCEELEKLIADLESKKNSCECDQLRL----------EIVSVRDKLESV 715

  Fly   753 VD-FQLAHQEILQKQE--QQLRSELEAE--------------------KRAALTKIEQERAQHAR 794
            .. |.||..||:||..  ::|..||...                    ::|.:|.: .|:.:|.:
  Fly   716 ESAFNLASSEIIQKATDCERLSKELSTSQNAFGQLQERYDALDQQWQAQQAGITTL-HEKHEHVQ 779

  Fly   795 DFEERLQCLELEQFKYKCNSEMLETERQALALAQ----QQEHTPLRHEDAVSTPAQKSTILEDIQ 855
            :..::||    |::      |.||:..::.:.|:    |.::|..:     :..|..:..||:.|
  Fly   780 EKYQKLQ----EEY------EQLESRARSASSAEFQRLQNDNTKFQ-----ADIASLNERLEEAQ 829

  Fly   856 RIM--LNPSEESLHKTQLMVKEATQRCRQLDLPLEFRQ----------TQTPDEFGLLRTVILIL 908
            .::  :..||.::.|.::...|.|.:.::|:...|..|          .::..|...||..|   
  Fly   830 NMLTEVQNSESTVEKLRIQNHELTAKIKELETNFEEMQREYDCLSNQLMESVQENDALREEI--- 891

  Fly   909 DKQRGLKAEWPTARL-------GVWLDLVRDNAEQQEKLNATTIFQSVEVDWEPLDADLNETLSD 966
             |||      ||:.:       |:..|.    .||::.:|....|..:....:.::...:..:|.
  Fly   892 -KQR------PTSHVEESMRSSGISSDF----DEQKQDINLLHQFVQLSESVQQIELQHHSGISR 945

  Fly   967 THNSSRIALNLSAMKDVLLNKP-LKRLLNASSSKSNTPRQTSTPSP----GSQLVH-FTKRLLTY 1025
            ...::::.|:.|        :| ||..|.::.......||:....|    |....| |..:.|:.
  Fly   946 LFRANQMKLDQS--------EPGLKLCLESAEYIEEDNRQSDATEPICLKGFLKRHRFQIKRLSQ 1002

  Fly  1026 DPEEIPESQSSFTTLVQQELQIMQRSA---------QRLRR---HCEAALLER-------ENHQ- 1070
            :..::.|.:.....:.|.|.:|.::||         ..:|.   :.|:||||:       |::| 
  Fly  1003 EHVDMGEEKRLLDIISQLEQEIEEKSALMEATEATINEMREQMTNLESALLEKSVIINKVEDYQR 1067

  Fly  1071 -------DNGVLAVSLQEALARMDTVLNGMHTSLARA---EAT--ACVTSPTKTQKAVRFL 1119
                   .|..:.:..:|...|: |..:.|..||.|.   |.|  .|.|||::.::.|..|
  Fly  1068 QIESLEKQNAEMTMVYEELQDRV-TRESSMSESLLRVPPDEDTLPGCPTSPSRREQEVATL 1127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nebNP_476817.1 KISc_KIF1A_KIF1B 119..525 CDD:276816 129/413 (31%)
KISc 120..525 CDD:214526 128/412 (31%)
Kinesin_assoc 524..657 CDD:292801 44/319 (14%)
FHA 634..740 CDD:238017 20/120 (17%)
cmetNP_524993.3 KISc 8..328 CDD:214526 128/412 (31%)
Motor_domain 8..321 CDD:277568 127/405 (31%)
Smc <680..1449 CDD:224117 102/497 (21%)
TMPIT 779..>867 CDD:285135 20/102 (20%)
Smc 1042..1910 CDD:224117 24/87 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45437996
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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