DRSC/TRiP Functional Genomics Resources

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Protein Alignment neb and Kif1a

DIOPT Version :10

Sequence 1:NP_476817.1 Gene:neb / 35293 FlyBaseID:FBgn0004374 Length:1121 Species:Drosophila melanogaster
Sequence 2:XP_038940678.1 Gene:Kif1a / 363288 RGDID:1304996 Length:1800 Species:Rattus norvegicus


Alignment Length:910 Identity:291/910 - (31%)
Similarity:455/910 - (50%) Gaps:168/910 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 VAVRVRPLNALECTRGQVTNVVQVHGNSNELTVQAGSSADASAGVTHFFSYDQVYYS-CDPERKN 186
            |||||||.|:.|.:|.... ::|:.|::..:.     :..........||:|..|:| ..||..|
  Rat     8 VAVRVRPFNSREMSRDSKC-IIQMSGSTTTIV-----NPKQPKETPKSFSFDYSYWSHTSPEDIN 66

  Fly   187 FACQAKVFEGTARPLIDTAFEGYNACLFAYGQTGSGKSYSMMGIEALDDAALDGGPPHDEAGIIP 251
            :|.|.:|:......::..||||||.|:|||||||:||||:|||.:           ..|:.||||
  Rat    67 YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ-----------EKDQQGIIP 120

  Fly   252 RFCHELFRRIEAVKSQQQLQVEVEVSYFEIYNEKIHDLLSVQHAAAATGESTPIQQQQQQQRPAL 316
            :.|.:||.||... :...:...|||||.|||.|::.|||:                  .:.:..|
  Rat   121 QLCEDLFSRINDT-TNDNMSYSVEVSYMEIYCERVRDLLN------------------PKNKGNL 166

  Fly   317 KVREHPIFGPYVVDLSAHSVDSYSALRNWLAVGNSQRATASTAMNDKSSRSHSIFNIVLNLTDLS 381
            :|||||:.||||.|||..:|.||:.:::.:..||..|..|:|.||:.|||||::|||:  .|...
  Rat   167 RVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNII--FTQKR 229

  Fly   382 SDDGLSSDTDSSTASSLRQTRRSKISLVDLAGSERISVSGSNGERIREGVSINKSLLTLGKVIAA 446
            .|    ::|:.:|      .:.|||||||||||||...:|:.|.|::||.:|||||.||||||:|
  Rat   230 HD----AETNITT------EKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISA 284

  Fly   447 LADSRKAIANGPLGS--GTPSTFVPYRESVLTWLLRENLGGNSKTVMLATISPASIHADETLATL 509
            ||:    :.:||..:  ...:.|:|||:|||||||||||||||:|.|:|.:|||.|:.||||:||
  Rat   285 LAE----MDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTL 345

  Fly   510 RYACKARSIVNRVKVNESPHDKIIRDLRAEVDRLKSL-----------RNEYERQRRLSGNSNNP 563
            |||.:|:.|.....:||.|::|:||:|:.||.||:.|           .|......:|:......
  Rat   346 RYADRAKQIRCNAIINEDPNNKLIRELKDEVTRLRDLLYAQGLGDITDTNTVPGGPKLTNALVGM 410

  Fly   564 VPRKIIIETSVDETEVEALR-------------QQLAERERELSRAQKSWMEKLKEAEDQRKSEL 615
            .|...:...|.....|.:|.             ::|.|.|:.::...::|.|||:..|..|....
  Rat   411 SPSSSLSALSSRAASVSSLHERILFAPGSEEAIERLKETEKIIAELNETWEEKLRRTEAIRMERE 475

  Fly   616 RVLKRRGLA-------LELTAEQKQACLVNLTADPILSGTLFYLLPQGLVRIGRGRLPGGSSSSQ 673
            .:|...|:|       |.:.:.:|...||||..||::|..|.|.:..|:.|:||     ..:..:
  Rat   476 ALLAEMGVAMREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGVTRVGR-----EDAERR 535

  Fly   674 PDIVLDGPLVALQHCSIEHE-RGG--KLYVIPGSEDFETYVNGELLKDRRQLFHGDRLVIGGSHY 735
            .||||.|..:..:||....: |||  .:..:...|..:|||||:.:.:...|..|:|:::|.||.
  Rat   536 QDIVLSGHFIKEEHCIFRSDSRGGGEAVVTLEPCEGADTYVNGKKVTEPSILRSGNRIIMGKSHV 600

  Fly   736 FRISNPFCSQRGK--------ADHPVDFQLAHQEILQKQEQQLRSELEAEKRAALTKIEQERAQH 792
            ||.::|..:::.:        ...|||:..|.:|:|:||...::.|:|       .::::...|:
  Rat   601 FRFNHPEQARQERERTPCAETPAEPVDWAFAQRELLEKQGIDMKQEME-------QRLQELEDQY 658

  Fly   793 ARDFEERLQCLELEQFKYKCNSEMLETERQALALAQ--QQEHTPLRHEDAVSTPAQKS------- 848
            .|:.||....||.::..|:...|.|:.:..:....:  ::|..|   ||.|....::.       
  Rat   659 RREREEATYLLEQQRLDYESKLEALQKQMDSRYYPEVNEEEEEP---EDEVQWTERECELALWAF 720

  Fly   849 --------TILEDIQRIMLNPSEESLHKTQLMVKEATQRCRQLDLPLEFR---QTQT------PD 896
                    |.|.|:           |....:.:|||.....:|...::|:   .|.|      ||
  Rat   721 RKWKWYQFTSLRDL-----------LWGNAIFLKEANAISVELKKKVQFQFVLLTDTLYSPLPPD 774

  Fly   897 EFGLL--------------RTVIL--ILDKQRGLKAEWPTARLGVWLDLVRDNAEQQEKLNATTI 945
               ||              ||::.  :.|::.|....|...:|...|||:|:..::..::.::.:
  Rat   775 ---LLPPEAAKDRETRPFPRTIVAVEVQDQKNGATHYWTLEKLRQRLDLMREMYDRAAEVPSSVV 836

  Fly   946  945
              Rat   837  836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nebNP_476817.1 KISc_KIF1A_KIF1B 119..525 CDD:276816 172/404 (43%)
SMC_N 514..>615 CDD:481474 29/124 (23%)
FHA_KIF14 627..741 CDD:438759 38/116 (33%)
Kif1aXP_038940678.1 KISc_KIF1A_KIF1B 4..361 CDD:276816 172/404 (43%)
Kinesin_assoc 358..524 CDD:465047 41/165 (25%)
FHA_KIF1A 500..614 CDD:438778 38/118 (32%)
ERM_helical 633..>686 CDD:466641 15/59 (25%)
KIF1B 814..861 CDD:463574 5/23 (22%)
DUF3694 1250..1406 CDD:463599
PH_KIFIA_KIFIB 1681..1783 CDD:269939
Blue background indicates that the domain is not in the aligned region.

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