DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment neb and stard9

DIOPT Version :9

Sequence 1:NP_476817.1 Gene:neb / 35293 FlyBaseID:FBgn0004374 Length:1121 Species:Drosophila melanogaster
Sequence 2:XP_012824730.2 Gene:stard9 / 100489699 XenbaseID:XB-GENE-995220 Length:3979 Species:Xenopus tropicalis


Alignment Length:1131 Identity:324/1131 - (28%)
Similarity:497/1131 - (43%) Gaps:265/1131 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 SNMIVAVRVRPLNALECTRG------------QVTNVVQVH-----GNSNELTVQAGSSADASAG 166
            :|:.||:||||.:..|...|            ::.|:...|     |:..|..::          
 Frog     2 ANVRVALRVRPPSKRETAEGARIILNVDDKVARIKNIRLDHKSDGCGDVRERLME---------- 56

  Fly   167 VTHFFSYDQVYYSCDPERKNFACQAKVFEGTARPLIDTAFEGYNACLFAYGQTGSGKSYSMMGIE 231
                |.:|..|:|.|||...:|.|..||:.....::..|..|||.||||||||||||:|:|||..
 Frog    57 ----FGFDSCYWSVDPEDPKYASQEVVFQDLGTLVLSEAISGYNVCLFAYGQTGSGKTYTMMGTP 117

  Fly   232 ALDDAALDGGPPHDEAGIIPRFCHELFRRIEAVKSQQQLQVEVEVSYFEIYNEKIHDLLSVQHAA 296
            |             ..|:.||.|..||...|. ..:.......|||:.|||||::.|||      
 Frog   118 A-------------SIGLTPRICEGLFSYDEG-SPEAPNSCRTEVSFLEIYNERVRDLL------ 162

  Fly   297 AATGESTPIQQQQQQQRP-ALKVREHPIFGPYVVDLSAHSVDSYSALRNWLAVGNSQRATASTAM 360
                      .:.:|::| .|:|||||..||||..||.|.|.||..:...|..|...|.||:|.:
 Frog   163 ----------HKSEQKKPYTLRVREHPERGPYVQGLSQHVVTSYEQVVALLEEGMENRITAATHI 217

  Fly   361 NDKSSRSHSIFNIVLNLTDLSSDDGLSSDTDSSTASSLRQTRRSKISLVDLAGSERISVSGSNGE 425
            :|.|||||:||.|  ..|....:|.|.::.            .|||:|||||||||.|..... :
 Frog   218 HDASSRSHAIFTI--QYTQAMLEDNLPTEI------------TSKINLVDLAGSERASPEYCK-D 267

  Fly   426 RIREGVSINKSLLTLGKVIAALA---------DSRKAIA-NGPLGS-GTPS----------TFVP 469
            |:.||.:||:||:|||.||:.||         .|..:|| :|..|| |:||          .:||
 Frog   268 RLTEGSNINRSLVTLGIVISTLAQNSQMTSSCQSINSIASDGDSGSQGSPSGGSMNGSKRQPYVP 332

  Fly   470 YRESVLTWLLRENLGGNSKTVMLATISPASIHADETLATLRYACKARSIVNRVKVNESPHDKIIR 534
            ||:|:|||||:::|||||||:|:||:||||...:||::|||||..|::|||:.:|||..:.|:||
 Frog   333 YRDSILTWLLKDSLGGNSKTIMIATVSPASSSYNETMSTLRYASHAKNIVNKPRVNEDANVKLIR 397

  Fly   535 DLRAEVDRLKSLRNEYERQRRLSGNSNNPVPRKIIIETSVDETEVEALRQQLAERERELSRAQKS 599
            |||.|::|||::...:|.:               .|..|..:.:.....:.:.:.|.::.:..|.
 Frog   398 DLREEINRLKNMLQSFEIR---------------TISPSFSDEKDGNFTELVKQNELKIEQLTKD 447

  Fly   600 WMEKLKEAEDQRKSELRVLKRRGLALE-----LTAEQKQACLVNLTADPILSGTLFYLLPQGLVR 659
            |.||..:       :..::::..:.:.     ||.:.....|:.:..|.:.:..:.|.|.:|...
 Frog   448 WTEKWGD-------KAAIMEQYNVDINQGKAGLTIDSNLPHLITMDDDILSTRVVIYQLKEGQTN 505

  Fly   660 IGRGRLPGGSSSSQPDIVLDGPLVALQHCSIEHERGG-KLYVIPGSEDFETYVNGELLKDRRQLF 723
            |||     ..|..:.||||.|..:...||.|.:..|. :|..:||:   :..:||:.:....:|.
 Frog   506 IGR-----FDSEQEQDIVLQGEWIERDHCMIHNCSGAVELQPVPGA---QCTINGQEVTGSCRLS 562

  Fly   724 HGDRLVIGGSHYFRISNP----FCSQRGKADHPVDF----------------------------Q 756
            .||.|:||.:|.||.:||    ...|| ::|..|.|                            :
 Frog   563 QGDVLIIGKTHRFRFNNPAEAAVLRQR-RSDSQVSFVSSNSLDWLDLSGNFSTSTNENPLILNRK 626

  Fly   757 LAHQEILQK------------QEQQLRSELEAEKRAALTKIEQERAQHARDFEERLQCLELEQFK 809
            |..:|..||            |:|||..| :.:|:...:||..|:.            |||||  
 Frog   627 LESEEYQQKLKDLEGYYQQQVQQQQLYVE-DLKKQIQTSKIRSEKE------------LELEQ-- 676

  Fly   810 YKCNSEMLETERQALALAQQQ---EHTPLRHEDAVSTP-----AQKSTILEDIQRIMLNPSEESL 866
             ...::::|..||.|...:||   .|...|...|.:.|     |:.....|...|    ||...|
 Frog   677 -SLINQIIEENRQWLVKEEQQLTKSHLQRRDSSAQTDPKPIAEAEVQNTAETENR----PSAAEL 736

  Fly   867 HKTQLMVKEATQRCRQLDLPLEFRQTQTPDEFGLLRTVILILDKQRGLKAEWPTARLGVWLDLVR 931
            .:.:|:.:|..::|.........|:.:.  :|.|.|    |:.||:.|:|:.....|.....:..
 Frog   737 DRKRLVQRELLRKCSLRRAERNIRRKRI--KFQLER----IIKKQKLLEAKKELQHLQAVCWISE 795

  Fly   932 DNAEQQEKLNA------TTIFQSVEVDWEPLDADLNETLSDTHNSSRIALNLSAMKDVLLNKPLK 990
            |..:|.:.|::      .|.|:...:   |........||....:...|::|.:.|.....||.:
 Frog   796 DTVKQLQNLDSDGPAKGLTHFRPSAL---PRSFQTLPNLSILKRNCEPAVSLHSNKPSNEKKPRR 857

  Fly   991 RL-LNASSSKSNTPRQTSTPSPGSQLVHFTKRLLTYDPEEIP-------ESQSSF------TTLV 1041
            .: :...||...:..|:.||:....:|.        ..|:.|       ..||::      .|.:
 Frog   858 AVSVECLSSTCCSGLQSETPNDHQCIVQ--------GVEKRPFGSITNQNKQSTYGKFVCAYTQM 914

  Fly  1042 QQELQIMQRSAQRLRRHCEAALLEREN-------HQDNGVLAV--SLQEAL--ARMDTVLNGMHT 1095
            .::.|.|.::..|.:......|..|.:       :.|..|.:.  |.|::|  .|..|:....:|
 Frog   915 SKKRQKMDKTGSRSKSKTTEPLKRRNSRIPIATTNSDTKVKSFRSSPQQSLESCRKSTLQENKNT 979

  Fly  1096 SLARAEATA---------CVTSPTKT 1112
             |.:.|||.         .:||..||
 Frog   980 -LEKNEATVKKNTKSIPKTITSGKKT 1004

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nebNP_476817.1 KISc_KIF1A_KIF1B 119..525 CDD:276816 170/444 (38%)
KISc 120..525 CDD:214526 170/443 (38%)
Kinesin_assoc 524..657 CDD:292801 27/137 (20%)
FHA 634..740 CDD:238017 32/106 (30%)
stard9XP_012824730.2 KISc_KIF1A_KIF1B 2..388 CDD:276816 170/444 (38%)
FHA 479..579 CDD:238017 32/107 (30%)
SbcC <628..>789 CDD:223496 46/186 (25%)
SRPBCC 3775..3977 CDD:417480
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D123768at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.