DRSC/TRiP Functional Genomics Resources

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Protein Alignment vls and wdr77

DIOPT Version :10

Sequence 1:NP_610019.2 Gene:vls / 35289 FlyBaseID:FBgn0003978 Length:367 Species:Drosophila melanogaster
Sequence 2:NP_001120009.1 Gene:wdr77 / 100144971 XenbaseID:XB-GENE-972898 Length:333 Species:Xenopus tropicalis


Alignment Length:315 Identity:77/315 - (24%)
Similarity:134/315 - (42%) Gaps:45/315 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 LALATNRREGRQWWGMLFGY-GRDQMHHMSVDSANFKLQAEHTVNIVRYAEDDFLLVALGDTRLQ 127
            |.||.:....|.|.|.::.: ..|...:.|:.:|.  :|.|..|..|.:..:..:|||.....::
 Frog    32 LLLAASSLSSRTWGGSIWVFKDPDSAPNESLCTAG--VQTEAGVTDVAWVSEKGILVASDSGAVE 94

  Fly   128 AWSTYSKVRDSQSPYCLFLVGESS--AHPTPISQLSVFKADPRTAVSGSADSTLNVWDLSGADMV 190
            .|    ::.:.:|    .||.:.:  .|...:..|||| :|...||||..|.::.||||:...::
 Frog    95 LW----EILEKES----LLVNKFTKYEHDDIVKSLSVF-SDGTQAVSGGKDFSVKVWDLTQKTLL 150

  Fly   191 STYRSRSSHTDKLTGLATPAASVDKFVTCDRGGCARLWDVRAAAPSSTCLYADASHVLSFTSAAW 255
            ::|.:.||..:.:.  |.|.... .|::|...|...|||.|...|::...:.....:.  ||..|
 Frog   151 NSYIAHSSEVNCVA--ACPGKEA-IFLSCGEDGKILLWDTRKPKPATRIDFFTPDTIP--TSVTW 210

  Fly   256 AAASELQGDNHIYLGDYDGKVHTLDIRVPRKLAETREYFDKGHVAQLLING--------PHLAAM 312
                ..:.|:....||..|.|:.::::       ..:...|..|....|.|        |:||::
 Frog   211 ----HPEKDDTFACGDEIGNVYLVNLK-------NLDSVQKSSVHSQSITGLAYSYHSSPYLASI 264

  Fly   313 SNLPASVKVANVQAGHEF-IYTHQDTHSRLTDAVWT--DDSTLITIGHGRKMVTH 364
            |. ..:|.|.:......| ..:|:|.   :|...|:  |.|...|:|...|::.|
 Frog   265 SE-DCTVAVYDSDFSEAFRDLSHRDF---VTGVAWSPLDHSKFTTVGWDHKVLHH 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vlsNP_610019.2 WD40 <114..>362 CDD:441893 63/260 (24%)
WD40 repeat 157..198 CDD:293791 15/40 (38%)
WD40 repeat 204..245 CDD:293791 10/40 (25%)
WD40 repeat 250..281 CDD:293791 8/30 (27%)
WD40 repeat 289..335 CDD:293791 11/54 (20%)
wdr77NP_001120009.1 WD40 <70..312 CDD:441893 65/270 (24%)
WD40 repeat 73..110 CDD:293791 9/44 (20%)
WD40 repeat 119..154 CDD:293791 14/35 (40%)
WD40 repeat 160..197 CDD:293791 10/39 (26%)
WD40 repeat 205..242 CDD:293791 9/49 (18%)
WD40 repeat 248..273 CDD:293791 7/25 (28%)
WD40 repeat 290..312 CDD:293791 6/21 (29%)

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