DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lok and camk4

DIOPT Version :9

Sequence 1:NP_477219.1 Gene:lok / 35288 FlyBaseID:FBgn0019686 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_001017607.1 Gene:camk4 / 550270 ZFINID:ZDB-GENE-050417-76 Length:364 Species:Danio rerio


Alignment Length:308 Identity:99/308 - (32%)
Similarity:163/308 - (52%) Gaps:25/308 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 EEINKTYYVNRKLGSGAYGLVRLVYDTRTCQQFAMKIVKKNMLSGARPSTNFSDPDRVLNEAKIM 232
            |.:...|.:..:||.||..:|.......|.:.:|:|::||.:           |...|..|..::
Zfish    23 ETLADFYELESELGRGATSVVYRCRQKGTQKHYAVKMLKKTV-----------DKKIVRTEIGVL 76

  Fly   233 KNLSHPCVVRMHDIVDKPDSVYMVLEFMRGGDLLNRIISNKLLSEDISKLYFYQMCHAVKYLHDR 297
            ..||||.::::.:|.:.|..:.:|||.:.||:|.:|::.....||..:.....|:..||.|||:.
Zfish    77 LRLSHPNIIKLKEIFETPAEISLVLELVTGGELFDRVVEKGYYSERDAADAVKQVLEAVAYLHEN 141

  Fly   298 GITHRDLKPDNVLLETNDEETLLKVSDFGLSKFVQKDSVMRTLCGTPLYVAPEVLITGGRE-AYT 361
            |:.||||||:|:|..|:..:..||::||||||.|.....|:|:||||.|.|||:|    |. ||.
Zfish   142 GVVHRDLKPENLLYATSAPDAPLKIADFGLSKIVDDQVTMKTVCGTPGYCAPEIL----RGCAYG 202

  Fly   362 KKVDIWSLGVVLFTCLSGTLPFSDEYGTP-AAQQIKKGRFAYGHPSWKSVSQRAKLLINQMLIVD 425
            .:||:||:||:.:..|.|..||.|:.|.. ..::|....:.:..|.|.:||..||.|:.::::.|
Zfish   203 PEVDMWSVGVITYILLCGFEPFFDDRGDQYMFKRILNCEYEFVSPWWDNVSLNAKDLVKKLIVQD 267

  Fly   426 PERRPSIDDVLQSSWLRDAPMLQKAKRLMKLDGMEIEEENFLEPPTKR 473
            |::|.:....||..|:        ..:.:....|:..::..||...:|
Zfish   268 PKKRLTTQQALQHPWV--------TGKAVNFTHMDTAQKKLLEFNARR 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lokNP_477219.1 FHA 39..156 CDD:238017
STKc_Chk2 167..441 CDD:270986 94/274 (34%)
S_TKc 174..441 CDD:214567 93/268 (35%)
camk4NP_001017607.1 STKc_CaMKIV 25..318 CDD:270987 98/306 (32%)
Pkinase 29..283 CDD:278497 93/268 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.