DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lok and ssp2

DIOPT Version :9

Sequence 1:NP_477219.1 Gene:lok / 35288 FlyBaseID:FBgn0019686 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_588376.1 Gene:ssp2 / 2539109 PomBaseID:SPCC74.03c Length:576 Species:Schizosaccharomyces pombe


Alignment Length:279 Identity:95/279 - (34%)
Similarity:159/279 - (56%) Gaps:22/279 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 PEEINK----TYYVNRKLGSGAYGLVRLVYDTRTCQQFAMKIVKKNMLSGARPSTNFSDPD-RVL 226
            ||.|:|    .|.:...||.|::|.|:|....:|.|:.|:|.:.:.:|..       ||.. ||.
pombe    23 PEAISKRHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKK-------SDMHMRVE 80

  Fly   227 NEAKIMKNLSHPCVVRMHDIVDKPDSVYMVLEFMRGGDLLNRIISNKLLSEDISKLYFYQMCHAV 291
            .|...:|.|.||.:::::|::..|..:.||:|: .||:|.:.|:..|.::||..:.:|.|:..|:
pombe    81 REISYLKLLRHPHIIKLYDVITTPTDIVMVIEY-AGGELFDYIVEKKRMTEDEGRRFFQQIICAI 144

  Fly   292 KYLHDRGITHRDLKPDNVLLETNDEETLLKVSDFGLSKFVQKDSVMRTLCGTPLYVAPEVLITGG 356
            :|.|...|.||||||:|:||   |:...:|::|||||..:...:.::|.||:|.|.||||:  .|
pombe   145 EYCHRHKIVHRDLKPENLLL---DDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVI--NG 204

  Fly   357 REAYTKKVDIWSLGVVLFTCLSGTLPFSDEYGTPAAQQIKKGRFAYGHPSWKSVSQRAKLLINQM 421
            :.....:||:||.|:||:..|.|.|||.||:.....:::..  ..|..|.:  :|..|:.||.:|
pombe   205 KLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNS--CVYVMPDF--LSPGAQSLIRRM 265

  Fly   422 LIVDPERRPSIDDVLQSSW 440
            ::.||.:|.:|.::.:..|
pombe   266 IVADPMQRITIQEIRRDPW 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lokNP_477219.1 FHA 39..156 CDD:238017
STKc_Chk2 167..441 CDD:270986 95/279 (34%)
S_TKc 174..441 CDD:214567 91/268 (34%)
ssp2NP_588376.1 STKc_AMPK_alpha 31..285 CDD:270981 91/271 (34%)
S_TKc 34..285 CDD:214567 91/268 (34%)
UBA_SNF1_fungi 305..351 CDD:270519
AdenylateSensor 451..573 CDD:293187
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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