DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lok and si:ch73-60h1.1

DIOPT Version :9

Sequence 1:NP_477219.1 Gene:lok / 35288 FlyBaseID:FBgn0019686 Length:476 Species:Drosophila melanogaster
Sequence 2:XP_002663771.2 Gene:si:ch73-60h1.1 / 100332381 ZFINID:ZDB-GENE-140106-152 Length:438 Species:Danio rerio


Alignment Length:294 Identity:98/294 - (33%)
Similarity:162/294 - (55%) Gaps:20/294 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 YYVNRKLGSGAYGLVRLVYDTRTCQQFAMKIVKKNMLSGARPSTNFSDPDRVLNEAKIMKNLSHP 238
            |.:..:||.||..:|....:.:|.:.:|:|::||.:           |...|..|..::..||||
Zfish    28 YNMGPELGRGATSVVLRCEEKQTEKPYAVKVLKKTI-----------DKKIVRTEIGVLLRLSHP 81

  Fly   239 CVVRMHDIVDKPDSVYMVLEFMRGGDLLNRIISNKLLSEDISKLYFYQMCHAVKYLHDRGITHRD 303
            .::|:.:|.:....::::||.:.||:|.:||:.....||..:.....|:..||.|||:.|:.|||
Zfish    82 NIIRLKEIFETETEIFLILELVTGGELFDRIVERGYYSERDAAHVIKQILEAVAYLHENGVVHRD 146

  Fly   304 LKPDNVLLETNDEETLLKVSDFGLSKFVQKDSVMRTLCGTPLYVAPEVLITGGREAYTKKVDIWS 368
            |||:|:|......:..||::||||||.:.:...|:|:||||.|.|||:|   ...||..:||:||
Zfish   147 LKPENLLYADLSIDAPLKIADFGLSKIIDEQVTMKTVCGTPGYCAPEIL---RGNAYGPEVDMWS 208

  Fly   369 LGVVLFTCLSGTLPFSDEYGTP-AAQQIKKGRFAYGHPSWKSVSQRAKLLINQMLIVDPERRPSI 432
            :||:|:..|.|..||.|:.|.. ...:|....:.:..|.|..||..||.|:|:::::||.:|.::
Zfish   209 VGVILYILLCGFEPFFDQRGDQYMYSRILNCDYEFVSPWWDEVSLNAKDLVNKLIVLDPHKRLTV 273

  Fly   433 DDVLQSSWLRDAPMLQKAKRLMKLDGMEIEEENF 466
            ...|:..|     :|.||.|...:|..:.:.:.|
Zfish   274 KQALEHPW-----VLGKAARFSHMDTTQRKLQEF 302

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lokNP_477219.1 FHA 39..156 CDD:238017
STKc_Chk2 167..441 CDD:270986 91/267 (34%)
S_TKc 174..441 CDD:214567 91/267 (34%)
si:ch73-60h1.1XP_002663771.2 STKc_CaMKIV 24..317 CDD:270987 98/294 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.