DRSC/TRiP Functional Genomics Resources

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Protein Alignment barr and ncaph

DIOPT Version :9

Sequence 1:NP_001286094.1 Gene:barr / 35287 FlyBaseID:FBgn0014127 Length:735 Species:Drosophila melanogaster
Sequence 2:XP_031753714.1 Gene:ncaph / 493346 XenbaseID:XB-GENE-5738397 Length:708 Species:Xenopus tropicalis


Alignment Length:772 Identity:195/772 - (25%)
Similarity:312/772 - (40%) Gaps:179/772 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 NDDEAERREARRRTL--LQQHHRSSTLESIE-------DNET--------------IKNCLELYN 71
            ||||.||:..|...:  ||..:..|...:|.       |..|              ...|::|..
 Frog    45 NDDERERKLRRMSRVIDLQLSNADSPASAISPAQSRGIDTPTSLLPKLSNTQISDHYSTCIKLSQ 109

  Fly    72 GNKVSKDNAWNLMLIDSLANLLDHHHKRMSNFKMAGSSLEASSKVYGLRVDSIYLDAMRISAGLS 136
            .||::..||:.|.|||.:.::|.|....::|||:|..:|:||:|:|.:|||:::.|..::..||.
 Frog   110 ENKITTKNAFGLHLIDYMGDILKHKDSELTNFKVAAGTLDASAKIYAVRVDAVHADVYKVLGGLG 174

  Fly   137 ARTLTDKQINAAEDDDGPQGEQATGEGQDSAQQAAKEAAPKPKRQKKPISTVTKNRETLN-SRLD 200
                  |:..|.||.|..:.:.:. :.||...|         |::|:...|:.:|...:| |..:
 Frog   175 ------KESQATEDTDNQEIDNSK-DPQDRKNQ---------KKRKRSYKTIERNLNNINRSETE 223

  Fly   201 TAPLQDPVFGKLNSTVGSINASNRLMHNI-LPSFDSELRLRTTYNFWNSEESTEEVQDHTTLNAE 264
            .....||:|.|..::....:.:...:..: ..|:.||||..|.....::.|.||.          
 Frog   224 RKSEVDPLFQKTAASFDEFSTAGVFLSTLKCHSYHSELRFDTDVRPLSTTEETEP---------- 278

  Fly   265 MEQWPAT-SLMSTNLMRKLLPHAERSNLRPLHTGYIITSAPNPKSANEKAA---EVVQDEDH--D 323
                |:. |..||.|...:|...|:..:.|..:|:..... |..:.||..:   :..:..||  |
 Frog   279 ----PSPGSADSTELKPLILQCVEKRPICPSLSGFRFMQW-NSDAQNENLSLLMDKFKKSDHVFD 338

  Fly   324 EGLDNADDMCVNEISMAFDINAE-CEPMPDLDGPPPLVLEVDSNELEELTAEEQMVINNCRRLRK 387
            ...:..||...:|..:|.|.:|: |:.|             |:.::.|.....:.    ||..||
 Frog   339 INAEVEDDFAESEAPVADDFDADVCDGM-------------DAGDIREFAEHREA----CRSERK 386

  Fly   388 QTEFIEDLRPVDGNSKL------------EYSY---RPMDQISQFWAGPSHWKFKRTRPRSTFSQ 437
            .:.:...|..: ||..:            ||||   |.|    ..||||.||:|   |||...| 
 Frog   387 SSLYRPQLTQI-GNGDIGTMCLQLSSCPGEYSYFSPRTM----SMWAGPEHWRF---RPRQKAS- 442

  Fly   438 TNGQVDTQPIRTQRAKKSAHLNAN---------RRAKALDYGNVTENFFQQLDTTIRQRKANFQK 493
                .|:...:.::|||...||..         |:.:|.              ||:.:.....|.
 Frog   443 ----TDSDQQKVKKAKKVFELNFEDDVDFEVHFRKTRAA--------------TTLTKSTLESQN 489

  Fly   494 KWDPRKLILPTKFELDPDLFFKYESAPSIKLSKRAGEPDSDEGGDLGIDMDADMHHDDDNDQELF 558
            |   :...||..|..|||...:....|..::.|...:             |:....:||..:..:
 Frog   490 K---KSTTLPADFHYDPDNIARMSLRPKDRIRKTTVQ-------------DSVSETEDDIGEYDY 538

  Fly   559 NNEHFT-DAVPANVSVIAAIAAEQAAEASMMNVSAGEIGLT---QMNATC---NNTVFEIGTEFE 616
            ||.:.| :..||   :.||.:.:...:.:.:...:...|.:   |:|.|.   :|.|.|      
 Frog   539 NNPNDTSNFCPA---LQAADSDDDDDDGAFLGPESNSAGFSAENQLNITSYGESNLVAE------ 594

  Fly   617 GAPSQVAKVIVPFAKRAKVIDMKNLKKSCNSLIQKQLLNAVPE--ETIPSHPKKKGEHYSKGFAS 679
              |.:|.|:.:.:||.||.:|||.||.:..||:..     .||  |.:||   .|.|.......:
 Frog   595 --PQKVNKIEIHYAKTAKKMDMKRLKSNMWSLLAN-----CPESQEEMPS---SKKEEIDAALIT 649

  Fly   680 ----FQQVYQKLPDLLTTKMSDSLSPSVAFYAVLHLANDLKLRLIPQEDLEDFQIRQ 732
                |..|...|...|...|:.:||..:||..:|||||:..|:|...:||.|..|.|
 Frog   650 DERIFSSVTHDLQKRLPPVMAQNLSVPLAFACLLHLANEKNLKLQGMDDLSDVLIMQ 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
barrNP_001286094.1 Cnd2 7..731 CDD:283450 193/769 (25%)
ncaphXP_031753714.1 Cnd2 32..706 CDD:399062 194/770 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 156 1.000 Domainoid score I4164
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H133986
Inparanoid 1 1.050 156 1.000 Inparanoid score I4196
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D159113at33208
OrthoFinder 1 1.000 - - FOG0004936
OrthoInspector 1 1.000 - - oto104421
Panther 1 1.100 - - LDO PTHR13108
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R216
SonicParanoid 1 1.000 - - X3476
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.190

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