DRSC/TRiP Functional Genomics Resources

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Protein Alignment barr and cnd2

DIOPT Version :9

Sequence 1:NP_001286094.1 Gene:barr / 35287 FlyBaseID:FBgn0014127 Length:735 Species:Drosophila melanogaster
Sequence 2:NP_587811.1 Gene:cnd2 / 2538744 PomBaseID:SPCC306.03c Length:742 Species:Schizosaccharomyces pombe


Alignment Length:843 Identity:177/843 - (20%)
Similarity:314/843 - (37%) Gaps:237/843 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LRRSAVGSYQEGVSRMLTPFNDDEAERREARRRTLLQQH-HRSSTLESIED-NETIKNC------ 66
            ::|:::|.:.. ||  |...|||..|::.|:..:..|:. .|||.|.||.. .|::.|.      
pombe     1 MKRASLGGHAP-VS--LPSLNDDALEKKRAKENSRKQRELRRSSALHSITPRRESLNNSSPFNSS 62

  Fly    67 ------------LELYNGNKVSKDNAWNLMLIDSLANLLDHHHKRMSNFKMAGSSLEASSKVYGL 119
                        ::|...||::..|.||..|||...::.........||:.|..:|:...|:|..
pombe    63 HQVPVLSNFEEWIKLATDNKINSTNTWNFALIDYFHDMSLLRDGEDINFQKASCTLDGCVKIYTS 127

  Fly   120 RVDSIYLDAMRISAGLSARTLTDKQINAAEDDDGPQGEQATGEGQDSAQQAAKEAAPKPKRQKKP 184
            |:||:..:..::.:||:..:...:|....||          .|..|...|..||.    ||.::.
pombe   128 RIDSVATETGKLLSGLANDSKVLQQTEEGED----------AENDDEDLQKKKER----KRAQRS 178

  Fly   185 ISTVTKNRETLNS-RLDTAPLQDPVFGKLNSTVGSINASNRLMHNILPS------FD-SELRLRT 241
            :.|:.|:.|::.: :.:.....||:|.|:.:......|...||:::...      || |:..::.
pombe   179 VKTLVKDFESIRAKKFELECSFDPLFKKMCADFDEDGAKGLLMNHLCVDQHGRIVFDSSDTVIKD 243

  Fly   242 TYNFWNSEESTEEV-----QDHTTLNAEMEQWPATSLMSTNLMRKLL--------PHAERSNLRP 293
            ..|.....||.|.|     :.|.|   ||..      :..|:.|:.|        ...::..:.|
pombe   244 LENKDVEAESQEAVVAAPIESHDT---EMTN------VHDNISRETLNGIYKCYFTDIDQLTICP 299

  Fly   294 LHTGY---------------------IITSAPNPKSANEK----AAEVVQDEDHDEGLDNADDMC 333
            ...|:                     :||:.....:..||    ||.:..|.|.:||      ..
pombe   300 SLQGFEFDSKGNLDVSLLKSLSDEVNMITTTSLVDNTMEKTDADAASLSSDSDGEEG------HI 358

  Fly   334 VNEI-SMAFDINAECEPMPDLDGPPPLVLEVDSNELEELTAEEQMVINNCRRLRKQTEFIEDLRP 397
            |:.: .||:|     |..|.:|..|.   .:|.:|..:...:.::.:.:...:.:....|.   .
pombe   359 VHALEEMAYD-----EENPYVDVVPK---AMDESENPDFGVDTEVNMADGSTMNENYSIIS---T 412

  Fly   398 VDGNSKLEYSYRPMDQISQFWAGPSHWKFKRTRPR-----STFSQTNGQVDTQPIRTQRAKKSAH 457
            ...|...||..:.|   .:.||||.||:.:..|..     :.|:.:|....:..:       |..
pombe   413 AAANGVYEYFDKSM---KKNWAGPEHWRIQALRKNINNASTVFNSSNTAESSDNV-------SRS 467

  Fly   458 LNANRRAKALDYGNVTENFFQQLD---------TTIRQRKANFQKKWDPRKLILPTKFELDP--- 510
            |::..|.|..:..|..: |.|::|         ::::..|:::::.   .:.:||..::.|.   
pombe   468 LSSTERKKRRELDNAID-FLQEVDVEALFTPATSSLKLPKSHWKRH---NRCLLPDDYQYDSKRL 528

  Fly   511 -DLFFKYESAPSIKLSKRAGEPDSDEGGDLGI--------DMDADMHHDDDNDQELFNNEHFTDA 566
             .||.|         .|.:..|::|..|.|.:        |:|....|..|:|    .:::..:.
pombe   529 LQLFLK---------PKMSVLPNADGEGQLQLNKALDDENDLDGIQPHGFDSD----GSDNVDEG 580

  Fly   567 VPA-------------------------NVSVIAAIAAEQAAEASMMNVSAGEIGLTQMNATCNN 606
            :|.                         |:.:.|.:     |:..|:|                 
pombe   581 IPPYGFGDSDSPKQTPLLTPPSSSGFGDNLLLTARL-----AKPDMLN----------------- 623

  Fly   607 TVFEIGTEFEGAPSQVAKVIVPFAKRAKVIDMKNLKKSCNSLIQKQLLNAVPEETIPSH---PKK 668
                                  :|||||.:|::.||:.....:  .|.|.:.|.:|.||   .:.
pombe   624 ----------------------YAKRAKKVDVRVLKEKLWKCL--DLENTIKENSINSHIEGSEM 664

  Fly   669 KGEHYSKGFASFQQVYQKLPDLLTTKMSDSLSPSVAFYAVLHLANDLKLRLIPQEDLEDFQIR 731
            :.|..:....||.....:|.:....|....:|.|.||..||||||:..|.|...||..|..||
pombe   665 ESEETNMPVKSFFSTVNQLEETYEKKELKDISTSFAFICVLHLANEHNLELTSNEDFSDVFIR 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
barrNP_001286094.1 Cnd2 7..731 CDD:283450 175/841 (21%)
cnd2NP_587811.1 LOC7 66..739 CDD:227554 158/775 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 97 1.000 Domainoid score I1891
eggNOG 1 0.900 - - E1_COG5229
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 98 1.000 Inparanoid score I1678
OMA 1 1.010 - - QHG55639
OrthoFinder 1 1.000 - - FOG0004936
OrthoInspector 1 1.000 - - oto101594
orthoMCL 1 0.900 - - OOG6_103100
Panther 1 1.100 - - LDO PTHR13108
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R216
SonicParanoid 1 1.000 - - X3476
TreeFam 1 0.960 - -
1312.860

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