Protein Alignment COX4 and Apobec3

DIOPT Version :9

• Sequence 1: NP_001260612.1
• Gene: COX4 / 35279
• FlyBaseID: FBgn0032833
• Length: 182
• Species: Drosophila melanogaster
• Sequence 2: NP_001028875.1
• Gene: Apobec3 / 315137
• RGDID: 1307800
• Length: 385
• Species: Rattus norvegicus
• Alignment Length: 24
• Identity: 9/24 - (37%)
• Similarity: 11/24 - (45%)
• Gaps: 4/24 - (16%)

  Fly    42 VGYGW---NGTACY-ADRVDYPLP 61
            |.|.|   |...|| .:.:|..||
  Rat    36 VRYAWGRKNNFLCYEVNGMDCALP 59

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
COX4	NP_001260612.1	COX4	50..181	CDD:281003	5/13 (38%)
Apobec3	NP_001028875.1	APOBEC_N	29..199	CDD:285428	9/24 (38%)
		cytidine_deaminase	<71..150	CDD:238610
		APOBEC_C	141..186	CDD:283020
		APOBEC_N	212..378	CDD:285428
		cytidine_deaminase	226..332	CDD:238610
		APOBEC_C	322..365	CDD:283020

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG4075
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900