DRSC/TRiP Functional Genomics Resources

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Protein Alignment COX4 and Cox4i1

DIOPT Version :9

Sequence 1:NP_001260612.1 Gene:COX4 / 35279 FlyBaseID:FBgn0032833 Length:182 Species:Drosophila melanogaster
Sequence 2:NP_058898.1 Gene:Cox4i1 / 29445 RGDID:68374 Length:169 Species:Rattus norvegicus


Alignment Length:171 Identity:57/171 - (33%)
Similarity:85/171 - (49%) Gaps:23/171 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 AVHTLDKIGKREIVGYGWNGTAC-----------------YADRVDYPLPAV-RFREPTNEINAL 75
            |...|..||||.|     :.:.|                 |.||.|||||.| ..:..:....||
  Rat     3 ATRALSLIGKRAI-----STSVCLRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKLLSASQKAL 62

  Fly    76 RAKEQGDWKKLSTQEIKALYRASFCQTIAEVQAGSGEWKLHLGVSLLFCAAAIWVAVLMNIFVYD 140
            :.||:.||..||..|...|||..|.::.||:..|:.|||..:|:::.|......|.:....:||.
  Rat    63 KEKEKADWSSLSRDEKVQLYRIQFNESFAEMNKGTNEWKTVVGLAMFFIGFTALVLIWEKSYVYG 127

  Fly   141 ELPVTFDEEHQKAQLQRIIDLEINPVTGLTSKWDYENKKWK 181
            .:|.|||.:....|.:|::|:::||:.|.::||||...:||
  Rat   128 PIPHTFDRDWVAMQTKRMLDMKVNPIQGFSAKWDYNKNEWK 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
COX4NP_001260612.1 COX4 50..181 CDD:281003 48/148 (32%)
Cox4i1NP_058898.1 COX4 36..168 CDD:397197 47/131 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166344988
Domainoid 1 1.000 108 1.000 Domainoid score I6289
eggNOG 1 0.900 - - E1_KOG4075
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 108 1.000 Inparanoid score I4813
OMA 1 1.010 - - QHG48902
OrthoDB 1 1.010 - - D1591226at2759
OrthoFinder 1 1.000 - - FOG0002054
OrthoInspector 1 1.000 - - mtm9068
orthoMCL 1 0.900 - - OOG6_103849
Panther 1 1.100 - - O PTHR10707
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X922
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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