DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and ATRBP45C

DIOPT Version :10

Sequence 1:NP_610003.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_567764.1 Gene:ATRBP45C / 828808 AraportID:AT4G27000 Length:415 Species:Arabidopsis thaliana


Alignment Length:114 Identity:27/114 - (23%)
Similarity:51/114 - (44%) Gaps:4/114 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PLTNMKNVLKLSEHELQHGGKKSWHDMYKDSAWIFVAGFPYTLTEGDLVCVF-SQYGEVVNINLI 66
            |:.:.:...:|:..:|..|.::....   ....:||......:|:..|...| :.|..|....::
plant   145 PMPSSEQAFRLNWAQLGAGERRQAEG---PEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVV 206

  Fly    67 RDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVDHVADYKP 115
            .|..||:|||:.|:.:.|:...:.|:..:||.....|.:|....|:.||
plant   207 NDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKP 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_610003.1 RRM_ist3_like 25..113 CDD:409845 21/88 (24%)
ATRBP45CNP_567764.1 RRM1_SECp43_like 81..158 CDD:409780 2/12 (17%)
RRM2_SECp43_like 172..251 CDD:409781 20/78 (26%)
RRM_SF 277..348 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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