DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and RBM28

DIOPT Version :10

Sequence 1:NP_610003.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_060547.2 Gene:RBM28 / 55131 HGNCID:21863 Length:759 Species:Homo sapiens


Alignment Length:119 Identity:30/119 - (25%)
Similarity:52/119 - (43%) Gaps:28/119 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 AWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGI 98
            |.:.:....:..:|.||..||:|:|.|:.:|:.| ...||.:||.|:.:::......|:..:|..
Human   114 ARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAGKALKGMNMK 177

  Fly    99 KILDRTLRVD----------------------HVADY-----KPPKENEKMDEE 125
            :|..||:.||                      |.:.:     |..:|.|.|:||
Human   178 EIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEE 231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_610003.1 RRM_ist3_like 25..113 CDD:409845 24/100 (24%)
RBM28NP_060547.2 RRM1_RBM28_like 5..81 CDD:409847
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 84..105
RRM2_RBM28_like 115..190 CDD:409848 22/75 (29%)
PABP-1234 126..721 CDD:130689 29/107 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..330 7/31 (23%)
RRM3_RBM28_like 335..417 CDD:409849
RRM4_RBM28_like 487..581 CDD:409850
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 594..759
Blue background indicates that the domain is not in the aligned region.

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