DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG10466 and rbmx2

DIOPT Version :9

Sequence 1:	NP_001260601.1	Gene:	CG10466 / 35268	FlyBaseID:	FBgn0032822	Length:	154	Species:	Drosophila melanogaster
Sequence 2:	NP_001016941.1	Gene:	rbmx2 / 549695	XenbaseID:	XB-GENE-5891739	Length:	269	Species:	Xenopus tropicalis

Alignment Length:	166	Identity:	92/166 - (55%)
Similarity:	117/166 - (70%)	Gaps:	17/166 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MNPLTNMKNVLKLSEHELQHGGKK--SWHDMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNI 63
            |||||.:|.:.:|:..|...|.|.  |||..||||||:|:.|.||.|:|||::||||||||||||
Frog     1 MNPLTKVKLINELNAREASLGVKDSVSWHQDYKDSAWLFIGGLPYELSEGDIICVFSQYGEVVNI 65

  Fly    64 NLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVDHVADYKPPKENEKMDEETLR 128
            ||:||..:|:|:||||||:|||||||||||||||||:..||:||||||:|:|||:.|.:||.|..
Frog    66 NLVRDKSSGRSRGFCFLCFEDQRSTVLAVDNLNGIKVKGRTIRVDHVANYRPPKDAEDIDEITQS 130

  Fly   129 LYMEGCAPK---------------PQLQHIKTEKKD 149
            |..:||..:               |:.:..|.:|||
Frog   131 LREKGCGARTPSPVSSSQDEDEEPPRKKKDKKKKKD 166

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG10466	NP_001260601.1	RRM_ist3_like	25..113	CDD:240857	66/87 (76%)
CG10466	NP_001260601.1	RRM	<36..>126	CDD:223796	64/89 (72%)
rbmx2	NP_001016941.1	RRM_ist3_like	27..115	CDD:240857	66/87 (76%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	120	1.000	Domainoid score	I5674
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1484811at2759
OrthoFinder	1	1.000	-	-		FOG0004481
OrthoInspector	1	1.000	-	-		oto105153
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X3770
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	6.010