DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and tra2b

DIOPT Version :9

Sequence 1:NP_001260601.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_001006878.1 Gene:tra2b / 448667 XenbaseID:XB-GENE-5864557 Length:293 Species:Xenopus tropicalis


Alignment Length:97 Identity:28/97 - (28%)
Similarity:53/97 - (54%) Gaps:3/97 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 QHGGKKSWHDMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYE 83
            :|.|.::..|   .:..:.|.|.....||.||..|||:||.:.:::::.|.::.:|:||.|:.:|
 Frog   110 RHVGNRANPD---PNCCLGVFGLSLYTTERDLREVFSKYGPISDVSIVYDQQSRRSRGFSFVYFE 171

  Fly    84 DQRSTVLAVDNLNGIKILDRTLRVDHVADYKP 115
            :......|.:..||:::..|.:|||.....:|
 Frog   172 NVDDAKEAKERANGMELDGRRIRVDFSITKRP 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_001260601.1 RRM_ist3_like 25..113 CDD:240857 25/87 (29%)
RRM <36..>126 CDD:223796 25/80 (31%)
tra2bNP_001006878.1 RRM_SF 113..201 CDD:388407 26/90 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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