DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and CstF64

DIOPT Version :10

Sequence 1:NP_610003.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster


Alignment Length:116 Identity:44/116 - (37%)
Similarity:65/116 - (56%) Gaps:4/116 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 MYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVD 93
            |.|....:||...||..||..|..:||:.|.|:::.|:.|.::||.|||.|..|:||.:.:.|:.
  Fly    11 MDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMR 75

  Fly    94 NLNGIKILDRTLRVDHVADYKPPKENEKM--DEETLRLYMEGCAPK--PQL 140
            ||||.:|..||||||:....|...|.:::  ..:....|.|.|.|:  |:|
  Fly    76 NLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPEL 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_610003.1 RRM_ist3_like 25..113 CDD:409845 36/83 (43%)
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 36/82 (44%)
CSTF2_hinge 111..190 CDD:433869 6/16 (38%)
CSTF_C 377..416 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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