DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and tia1

DIOPT Version :10

Sequence 1:NP_610003.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:XP_012814227.2 Gene:tia1 / 394890 XenbaseID:XB-GENE-1002876 Length:389 Species:Xenopus tropicalis


Alignment Length:102 Identity:26/102 - (25%)
Similarity:49/102 - (48%) Gaps:1/102 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 KDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNL 95
            :|...:||......:|..|:...|:.:|.:.:..:::|..||||||:.|:.:.::.....|:..:
 Frog   103 QDHFHVFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQM 167

  Fly    96 NGIKILDRTLRVDHVADYKPPKENEKMDEETLRLYME 132
            .|..:..|.:|.:. |..|||......:..|.:|..|
 Frog   168 GGQWLGGRQIRTNW-ATRKPPAPKSTYESNTKQLTYE 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_610003.1 RRM_ist3_like 25..113 CDD:409845 20/81 (25%)
tia1XP_012814227.2 RRM1_TIA1 8..81 CDD:410027
RRM2_TIA1 104..181 CDD:410030 19/76 (25%)
RRM3_TIAR 214..286 CDD:241064
Blue background indicates that the domain is not in the aligned region.

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