DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and cstf2

DIOPT Version :10

Sequence 1:NP_610003.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:XP_009289373.1 Gene:cstf2 / 386806 ZFINID:ZDB-GENE-031118-2 Length:508 Species:Danio rerio


Alignment Length:112 Identity:43/112 - (38%)
Similarity:59/112 - (52%) Gaps:17/112 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 IFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKI 100
            :||...||..||..|..:||:.|.||:..|:.|.:|||.||:.|..|:||.:.:.|:.||||.:.
Zfish    26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 90

  Fly   101 LDRTLRVDHVADYKPPKENEKMDEETLRL----------YMEGCAPK 137
            ..|.||||:.|       :||..||...|          |.:||.|:
Zfish    91 SGRALRVDNAA-------SEKNKEELKSLGTGAPIIESPYGDGCMPE 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_610003.1 RRM_ist3_like 25..113 CDD:409845 34/76 (45%)
cstf2XP_009289373.1 RRM_CSTF2_CSTF2T 19..102 CDD:410072 34/82 (41%)
PABP-1234 <26..372 CDD:130689 43/112 (38%)
CSTF2_hinge 120..199 CDD:433869 4/11 (36%)
CSTF_C 464..503 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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