DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and Cstf2t

DIOPT Version :9

Sequence 1:NP_001260601.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_001101056.1 Gene:Cstf2t / 309338 RGDID:1310026 Length:629 Species:Rattus norvegicus


Alignment Length:83 Identity:36/83 - (43%)
Similarity:50/83 - (60%) Gaps:0/83 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 IFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKI 100
            :||...||..||..|..:||:.|.||:..|:.|.:|||.||:.|..|:||.:.:.|:.||||.:.
  Rat    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 82

  Fly   101 LDRTLRVDHVADYKPPKE 118
            ..|.||||:.|..|..:|
  Rat    83 SGRALRVDNAASEKNKEE 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_001260601.1 RRM_ist3_like 25..113 CDD:240857 34/76 (45%)
RRM <36..>126 CDD:223796 36/83 (43%)
Cstf2tNP_001101056.1 RRM <16..>109 CDD:223796 36/83 (43%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 33/73 (45%)
CSTF2_hinge 113..191 CDD:291025
CSTF_C 585..625 CDD:291002
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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