DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and Cstf2t

DIOPT Version :10

Sequence 1:NP_610003.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_001101056.1 Gene:Cstf2t / 309338 RGDID:1310026 Length:629 Species:Rattus norvegicus


Alignment Length:83 Identity:36/83 - (43%)
Similarity:50/83 - (60%) Gaps:0/83 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 IFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRSTVLAVDNLNGIKI 100
            :||...||..||..|..:||:.|.||:..|:.|.:|||.||:.|..|:||.:.:.|:.||||.:.
  Rat    18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 82

  Fly   101 LDRTLRVDHVADYKPPKE 118
            ..|.||||:.|..|..:|
  Rat    83 SGRALRVDNAASEKNKEE 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_610003.1 RRM_ist3_like 25..113 CDD:409845 34/76 (45%)
Cstf2tNP_001101056.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 33/75 (44%)
CSTF2_hinge 112..191 CDD:433869
CSTF_C 585..625 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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