DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10466 and rnp-9

DIOPT Version :10

Sequence 1:NP_610003.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_001359585.1 Gene:rnp-9 / 182350 WormBaseID:WBGene00007396 Length:312 Species:Caenorhabditis elegans


Alignment Length:117 Identity:30/117 - (25%)
Similarity:57/117 - (48%) Gaps:7/117 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 HELQ----HGGKKSWHDMYKDSA---WIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGK 73
            |.|:    |...:...:|..|::   .:||......::...|...|:::|||....:|||.:|.|
 Worm    62 HSLESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQK 126

  Fly    74 SKGFCFLCYEDQRSTVLAVDNLNGIKILDRTLRVDHVADYKPPKENEKMDEE 125
            |||:.|:.:.::::...|:..:||..|..|.:|.:..|.....:..:|:..|
 Worm   127 SKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFE 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_610003.1 RRM_ist3_like 25..113 CDD:409845 25/90 (28%)
rnp-9NP_001359585.1 RRM2_TIA1_like 88..162 CDD:409789 22/73 (30%)
RRM_SF 189..259 CDD:473069
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.