DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and cpf-2

DIOPT Version :10

Sequence 1:NP_610003.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_499734.1 Gene:cpf-2 / 176742 WormBaseID:WBGene00000774 Length:336 Species:Caenorhabditis elegans


Alignment Length:158 Identity:44/158 - (27%)
Similarity:75/158 - (47%) Gaps:25/158 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 LQHGGKKS---WHDMYKDSAWIFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCF 79
            :..||.||   .:|..:.|  :||....|.::|..:..:||:.|.|::|.::.|.:|||.||:.|
 Worm     1 MMSGGYKSSGVGNDRSQRS--VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGF 63

  Fly    80 LCYEDQRSTVLAVDNLNGIKILDRTLRVDHVAD-------------YKPPKENEKMDE------- 124
            :.:.|.::..:|:.||||.::..|.||||..|.             ..|.:||....|       
 Worm    64 IEFPDIQTAEVAIRNLNGYELSGRILRVDSAAGGMNMEEFGSSSNAPAPVEENPYGPECDAGKAP 128

  Fly   125 ETLRLYMEGCAPKPQLQHIKTEKKDSKN 152
            |.:...:...||:...:.:|..::..||
 Worm   129 ERISQTVASLAPEKMFELMKQLQESLKN 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_610003.1 RRM_ist3_like 25..113 CDD:409845 31/103 (30%)
cpf-2NP_499734.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 28/77 (36%)
CSTF2_hinge 115..194 CDD:433869 9/42 (21%)
CSTF_C 299..334 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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