DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10466 and Rbm39

DIOPT Version :10

Sequence 1:NP_610003.1 Gene:CG10466 / 35268 FlyBaseID:FBgn0032822 Length:154 Species:Drosophila melanogaster
Sequence 2:NP_573505.2 Gene:Rbm39 / 170791 MGIID:2157953 Length:530 Species:Mus musculus


Alignment Length:89 Identity:28/89 - (31%)
Similarity:52/89 - (58%) Gaps:3/89 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 HDMYKDSAW---IFVAGFPYTLTEGDLVCVFSQYGEVVNINLIRDSKTGKSKGFCFLCYEDQRST 88
            :::.|.||.   ::|....:.:||..|..:|..:|.:.:|.|:.||:||:|||:.|:.:.|....
Mouse   240 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 304

  Fly    89 VLAVDNLNGIKILDRTLRVDHVAD 112
            ..|::.|||.::..|.::|.||.:
Mouse   305 KKALEQLNGFELAGRPMKVGHVTE 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10466NP_610003.1 RRM_ist3_like 25..113 CDD:409845 28/89 (31%)
Rbm39NP_573505.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..146
SF-CC1 46..518 CDD:273721 28/89 (31%)
Interaction with JUN. /evidence=ECO:0000269|PubMed:11704680 291..406 12/38 (32%)
Activating domain 291..355 12/38 (32%)
Interaction with ESR1 and ESR2. /evidence=ECO:0000269|PubMed:11704680 355..406
Interaction with NCOA6. /evidence=ECO:0000269|PubMed:11704680 406..530
Blue background indicates that the domain is not in the aligned region.

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