DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CdGAPr and Arhgap15

DIOPT Version :9

Sequence 1:NP_001260600.1 Gene:CdGAPr / 35267 FlyBaseID:FBgn0032821 Length:1843 Species:Drosophila melanogaster
Sequence 2:NP_001013939.1 Gene:Arhgap15 / 295635 RGDID:1359304 Length:482 Species:Rattus norvegicus


Alignment Length:356 Identity:105/356 - (29%)
Similarity:165/356 - (46%) Gaps:71/356 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 PSP-AES-------IWWRGKKSHLQKSLYEV------GFFPQS-----------CVATIGDKVPR 367
            |.| |||       |.|..|....:||::::      .|..||           .:....|::|:
  Rat   138 PRPNAESVDLCGAHIEWAAKDKSSKKSVFQITTASGNEFLLQSDIDFLILDWFHAIKNAIDRLPK 202

  Fly   368 NFPMPAPLVG-------------------HLDASPTKPVLRK---------------HGKLIAFF 398
            |     |..|                   |:|....||..||               ..::.:..
  Rat   203 N-----PSFGSLELFSFQRSSSSEQPSHCHIDRKEQKPENRKSFMFRLHHSVSDTSDKNRVKSRL 262

  Fly   399 RSFILSRPSRRRLKQSGIYRERVFNCDLSEHLLNSGQDIPMVLRSCAEFIENYGV-IDGIYRLSG 462
            :.||..|||.:.|::.||.::::|...|..........:|..::.|.|.:|..|: :|||||:||
  Rat   263 KKFISRRPSLKTLQEKGIIKDQIFGSHLHTVCEREHSTVPWFVKQCIEAVEKRGLEVDGIYRVSG 327

  Fly   463 ITSNIQRLRRAFDEERVPDLGNPEMKQDIHAVSSLLKMYFRELPNPLCTYQLYDNFVEAIQVKAD 527
            ..:.||:||...::|...:|.:.:. :|||.|:..|||:||||..||..|..::.|||||  |..
  Rat   328 NLATIQKLRFIVNQEEKLNLDDSQW-EDIHVVTGALKMFFRELSEPLFPYSFFERFVEAI--KKQ 389

  Fly   528 EADERLRLMKETVLKLPPPHYRTLKYLAEHLYKVSQHHGRTGMTDKNLAIVWAPNLLRSPALESG 592
            ::|.::..||..|..||||::.|:|.|..||.|:.....:..|:.::|.||:.|.|||:.. |||
  Rat   390 DSDAKIETMKSLVKSLPPPNHDTMKILFGHLTKIVAKAAQNLMSTQSLGIVFGPTLLRAEN-ESG 453

  Fly   593 GVAALRGVGVQAVVTEYLIRNCHNIFDALDD 623
            .||.  .:..|..|.|:::.....||.:.:|
  Rat   454 NVAV--HMVYQNQVAEFMLTEYDKIFSSEED 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdGAPrNP_001260600.1 PX_domain 168..274 CDD:295365
SH3_ARHGAP32_33 299..358 CDD:212769 13/54 (24%)
RhoGAP_CdGAP 420..613 CDD:239849 70/193 (36%)
FliJ 1322..1457 CDD:304890
Arhgap15NP_001013939.1 PH 88..197 CDD:278594 13/58 (22%)
PH_ARHGAP9-like 89..199 CDD:270053 13/60 (22%)
RhoGAP_ARHGAP27_15_12_9 286..472 CDD:239868 70/191 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1449
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.