DRSC/TRiP Functional Genomics Resources

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Protein Alignment CdGAPr and rga7

DIOPT Version :9

Sequence 1:NP_001260600.1 Gene:CdGAPr / 35267 FlyBaseID:FBgn0032821 Length:1843 Species:Drosophila melanogaster
Sequence 2:NP_595866.1 Gene:rga7 / 2540635 PomBaseID:SPBC23G7.08c Length:695 Species:Schizosaccharomyces pombe


Alignment Length:601 Identity:137/601 - (22%)
Similarity:221/601 - (36%) Gaps:167/601 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 AVQPLNSKSCRFPKLEECAHFHYERVQLGPLSVQLLDDKSEHMGSSIASQSLGGDLPHSS--LRS 180
            ||..::....||    :.|...|.|.         ||:|  :.|.|  .:.:|...|.|:  |..
pombe   161 AVMQMDKSKSRF----KGAETEYNRA---------LDNK--NTGDS--QKKVGFFKPKSNAQLTK 208

  Fly   181 FSPESCWFIIRVCPQRCEPFLIKRSFENMQLLDEML---HRCVYDRKISGLRNMEELAAELPSES 242
            ...|:     |:..:..|..:..: .||.|.:.:.|   ||..|.::...|:  .|:.:.|    
pombe   209 LEDEA-----RLKAENAESDMHSK-IENAQNVQKQLLCIHRPNYIKQFFSLQ--REIESSL---- 261

  Fly   243 DVEYAVAKYLERFSKI--------------------------ASDSLTCGTILTWLQL------- 274
                 :|.|| |::|:                          |.|::...|......|       
pombe   262 -----IANYL-RYTKLCESNTLLNGLTIRPQKPTPTNCGLQHALDNINANTDFVQYVLHASIKHE 320

  Fly   275 DNKGRRLPLADGETQRTINTPAVGAAYGVRRYQAQAPDEINIEVGDMISV-IDMPSPAESIWWRG 338
            |||..    .|....:.|..|   ::||.    ..:..:.|..|...|.| ..:|||        
pombe   321 DNKNP----TDASKTKIIQPP---SSYGT----GSSAGKTNPPVNPTIKVTAAIPSP-------- 366

  Fly   339 KKSHLQKSLYEVGFFPQSCVAT-----IGDKVPRNFPMPA-PLVGHLDAS--------------- 382
                ||.:......||...||:     .....|...|..| ||...|..|               
pombe   367 ----LQNTNPAPSTFPNPSVASPAFPNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSSSSSN 427

  Fly   383 --------------------------PTKPVLR----KHGKLIAFFRSFILS-------RPSRRR 410
                                      ||.|.::    :..:.:|...|.|.|       ||:...
pombe   428 PRTSSPLASNAENKPPVAQQSPPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492

  Fly   411 LKQSGIYRERVFNCDLSEHLLNSGQDIPMVLRSCAEFIENYGV-IDGIYRLSGITSNIQRLRRAF 474
            .:.|...:..:|...|...:|....:||.::..|...:||:|: :.||||:...::.:..||..|
pombe   493 PQPSSPTKSLLFGARLDAIILREHSNIPNIVMQCTSQVENFGLNLQGIYRVPSSSARVNMLRSQF 557

  Fly   475 DEERVPDLGNPE-MKQDIHAVSSLLKMYFRELPNPLCTYQLYDNFVEAIQVKADEADERLRLMKE 538
            :...:..|..|| .:.|:|||:.|||::||||..||.......:|::|..|: ||: .|...:..
pombe   558 ENNPLLQLHTPEDYENDVHAVADLLKIFFRELREPLIPDNHQRDFIDAGNVE-DES-RRRDAVHR 620

  Fly   539 TVLKLPPPHYRTLKYLAEHLYKVSQHHGRTGMTDKNLAIVWAPNLLRSPALESGGVAALRGVGVQ 603
            .:..||..:|.|:::|..||.|:.::.....|:..||||:|.|.:::.        |.:..:...
pombe   621 AINDLPDANYSTIRHLTIHLAKIKENSDVNKMSTNNLAIIWGPTIIKQ--------ATIPEISSF 677

  Fly   604 AVVTEYLIRNCHNIFD 619
            :...|.||..|..|||
pombe   678 SRTIEILIDYCFTIFD 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdGAPrNP_001260600.1 PX_domain 168..274 CDD:295365 25/136 (18%)
SH3_ARHGAP32_33 299..358 CDD:212769 13/59 (22%)
RhoGAP_CdGAP 420..613 CDD:239849 57/194 (29%)
FliJ 1322..1457 CDD:304890
rga7NP_595866.1 F-BAR_Rgd1 39..277 CDD:153336 34/150 (23%)
PRR18 335..>406 CDD:292299 20/89 (22%)
RhoGAP_fRGD1 504..692 CDD:239863 58/197 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2255
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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