DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CdGAPr and arhgap21

DIOPT Version :9

Sequence 1:NP_001260600.1 Gene:CdGAPr / 35267 FlyBaseID:FBgn0032821 Length:1843 Species:Drosophila melanogaster
Sequence 2:XP_031759009.1 Gene:arhgap21 / 100037846 XenbaseID:XB-GENE-1011028 Length:1952 Species:Xenopus tropicalis


Alignment Length:1337 Identity:273/1337 - (20%)
Similarity:477/1337 - (35%) Gaps:428/1337 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDKVSTSLAAQLHSHALASAEAGGIGGVNGGPIACHASTDKDAQAPP-----LQFEMDAPAAAIS 61
            |.|:..:.|::.:|.::.|.:  ||..........|.|..::.|..|     |.|::|:...:.|
 Frog   630 SVKIPATYASKPYSPSVGSED--GIVKDQKAVNYIHVSGPQNFQRKPQTESALGFQLDSLKTSTS 692

  Fly    62 AQLNFKIVPADSLPG-------LSYQDMFASMNTSQISNASTESSC-------------SPPIQG 106
            |..:   .||.:.|.       .:.|::......|..:|||..:|.             ||..|.
 Frog   693 ASSS---SPAHTKPAKQVKHSTATSQNVDGKKTQSPEANASDSNSVLTSIDQVVLREKPSPGQQT 754

  Fly   107 AVPPPKPSRHMAVQPLNSKS---CRFPKLEECAHFHYERVQLGPLSVQLLDDKSEHMGSSIA--- 165
            :.|..:||...||..:...|   |..|. :.....|.:|::      |.....|:..|.|:|   
 Frog   755 SQPIRQPSYIFAVSDVEGASDTTCWLPN-DARREVHIKRIE------QKKASGSDSPGDSLASIP 812

  Fly   166 ------SQSLG---GDLPHSSLRSFSPESCWFIIRVCPQRCEPF-LIKRSF-------------- 206
                  |.|:.   .::|.|::.|.|.:....|..|.|....|. ||:|.|              
 Frog   813 FIDEPTSPSIDHEIANIPASAVISISVQPLPTITTVPPSPTSPVPLIRRHFSHDHDSIRPSILEV 877

  Fly   207 ----ENMQLLDEMLHRCVYDRKIS--------GLRNMEELAAELPSESDVEYAVAKYLERFSKIA 259
                |..:..||.|.....:.|:|        |::..|.:.:...|||..:.:        |.:.
 Frog   878 NSKTERSKSCDEGLDDYKDEGKLSLKQGSSLKGIKARENVPSSEDSESRKDSS--------SDVF 934

  Fly   260 SDS----------LT-------CGTILTW-------------LQLDNK---GRRLPLADGETQRT 291
            |||          ||       .|::..|             ||.|.|   |.....:|.|....
 Frog   935 SDSNKEGFLYFRQLTTEKGKRVSGSMRPWKQMYVVLRGSALYLQKDKKEQSGHSSAQSDEEQLIG 999

  Fly   292 INTPAVGAAYGVRR---------------YQAQAPDE-------------INIEVGDMIS--VID 326
            ||...:..:|...:               :||:..|:             :|.|..|..|  :|.
 Frog  1000 INGCLIDISYSETKRKNVFRLTTSDREFLFQAEDRDDMLAWIKAIQENGNLNDEQTDQASRVLIS 1064

  Fly   327 MPSPAESIWWRGKKSHLQKSLYEVGFFPQSCVATIGDKVPRNFPMPAPLVGHLDASPTKPVLRKH 391
            ......:.......:..::|       |:....|:..:.|.....|.   |.|. ||..|.....
 Frog  1065 KRIKEYNTMMSSSSNKSEQS-------PKPSRQTLSIRQPFRATKPE---GKLQ-SPHSPKQESE 1118

  Fly   392 GKLIA-----------FFRSFILSRPSRRRLKQSGIYRERVFNCDLSEHLLNSGQDIPMVLRSCA 445
            .:|.:           .:|. |:.:|..::....|.:..|:.:|..:    ::.:.:|:::..|.
 Frog  1119 RRLFSKDDISPPKDKGSWRR-IMKKPFEKKPTTGGTFGVRLDDCPPA----HNNKYVPLIVDVCC 1178

  Fly   446 EFIENYGV-IDGIYRLSG----ITSNIQRLRRAFDEERVPDLGNPEMKQDIHAVSSLLKMYFREL 505
            :.:|:.|: ..||||:.|    |:|..:.|.:...:..:.|    :..:|::.:|||||.:||:|
 Frog  1179 KLVEDRGLETTGIYRVPGNNAAISSMQEELNKGSTDIDIQD----DKWRDLNVISSLLKSFFRKL 1239

  Fly   506 PNPLCTYQLYDNFVEAIQVKADEADERLRLMKETVLKLPPPHYRTLKYLAEHLYKVSQHHGRTGM 570
            |:||.|.:.|::|:||  .:.::..|||:.:|..:|.||..||.|||||:.||..|:::..:..|
 Frog  1240 PDPLFTNEKYNDFIEA--NRTEDPVERLKTLKRLILDLPDHHYETLKYLSAHLKAVAENSEKNKM 1302

  Fly   571 TDKNLAIVWAPNLLRSPALESGGVAALRGVGVQAVVTEYLIRNCHNIF----------------- 618
            ..:|||||:.|.|:|:.  |......:..:..|..:.|.||:. |:.|                 
 Frog  1303 EPRNLAIVFGPTLVRTS--EDNMTHMVTHMPDQYKIVETLIQQ-HDWFFSEESADEPITAVQEES 1364

  Fly   619 -------------------------DALD----------------DHPARHSMVASATAAAANAA 642
                                     |..|                |..:|..:|:|..|||:...
 Frog  1365 TVESQPVPNIDHLLPNIGRTGLSPGDVSDSASDSAKSKGSWGSGKDQYSRELLVSSLFAAASRKR 1429

  Fly   643 GGE----------------------LRLE--------------------SLTDCESL-------- 657
            ..:                      |::|                    ||.|.:::        
 Frog  1430 KKQRDKPQPSSSEDELDNVFYQKELLQVEFQRPDKQNVDKDVDLKANALSLKDADNIKGTNIIKE 1494

  Fly   658 ------------------------LVEQR--EQDQSLGVV--ERPKSLSTGGAKLISLEEAQERH 694
                                    :|..|  ..|:::..:  :..:|:|..|..|.:..:|..:.
 Frog  1495 DKLEKDIMHSEATSPCPPKLSEPPIVNHRLPPDDKNIPQISFQMEESMSDSGTMLSTSSQASAQR 1559

  Fly   695 S--RVEGADLKQS----LPISMLTSASSNAASNIGSYI----------EVGGGPSS----LPDKY 739
            |  :|...:||.|    ..:|.:||..|..:|.|  ||          ||.....|    ..|:.
 Frog  1560 SKPKVVSPELKGSDFLTADVSSITSDYSTTSSTI--YITGLDQNLISPEVQSVAESKGEEADDER 1622

  Fly   740 HTVLSAPRSWQKRKPDKTPSWKS--IFSRSQRQGNPDPGQKITTDVK------------------ 784
            ..::|..|..:....:..|.:.|  .|.|..|....:|.:.:..:.:                  
 Frog  1623 SELISEGRPMETDSENDFPIFASSIAFDRQHRSKVEEPTRNVQVNSEGSPSCTEGSITPRMDRRR 1687

  Fly   785 ---------DSVASRVSFVQASHAHASKELTKHD----------KPKSIELLETTSNERDPKP-- 828
                     |:::.:.|..|.:.:..|.|....:          |.:|:.:.:||:|....:|  
 Frog  1688 FSSHKLIECDTLSRKKSIRQKTDSECSAESKNEETLSDAQEAVKKGRSLSIGDTTTNNEPEEPAW 1752

  Fly   829 -------MDLCIRSNSIDSLRTVGHSRSVSHDSYFDLLQSPQRGHMTTCPSRELSELG-LN-FDR 884
                   :.|.::: |.|.:..:|..::.:.::  ...::.:|.| |....|:.:|:. || :..
 Frog  1753 RIKITERLKLRLKA-SADDMFGIGSQKAQAAET--RKKKNIRRRH-TLGGQRDFAEISVLNAWKI 1813

  Fly   885 EEPEMRIFSESESLVSSPRVGKENVPPASGSATRRIMRARPEDFSSQTNSVNPSPK--------K 941
            .||     |..|:.:|:....|...|....|.:..:.|.|....:|:.:.|.|..|        |
 Frog  1814 NEP-----SSKEAELSAVDRLKPKCPSQDLSISDWLARERLRTSTSELSMVEPEEKRISDATSQK 1873

  Fly   942 QPRLNLLSPSSARTMPPPPLSAP---GTASSSCGHES 975
            :|    .|||     ||||.|:|   .||..:.|.||
 Frog  1874 EP----ASPS-----PPPPASSPSQVSTAIVTAGSES 1901

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdGAPrNP_001260600.1 PX_domain 168..274 CDD:295365 33/165 (20%)
SH3_ARHGAP32_33 299..358 CDD:212769 11/88 (13%)
RhoGAP_CdGAP 420..613 CDD:239849 63/197 (32%)
FliJ 1322..1457 CDD:304890
arhgap21XP_031759009.1 PDZ_signaling 55..165 CDD:238492
PH_ARHGAP21-like 938..1051 CDD:269955 17/112 (15%)
RhoGAP_ARHGAP21 1153..1348 CDD:239860 64/207 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2255
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.