DRSC/TRiP Functional Genomics Resources

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Protein Alignment CdGAPr and arhgap23a

DIOPT Version :9

Sequence 1:NP_001260600.1 Gene:CdGAPr / 35267 FlyBaseID:FBgn0032821 Length:1843 Species:Drosophila melanogaster
Sequence 2:XP_003198196.2 Gene:arhgap23a / 100006233 ZFINID:ZDB-GENE-121019-1 Length:1845 Species:Danio rerio


Alignment Length:1287 Identity:269/1287 - (20%)
Similarity:442/1287 - (34%) Gaps:399/1287 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 HASTDKDAQAPPLQFEMDAPAA--------AISAQLNFKIVPADSLPGLSYQDMFASMNTSQISN 93
            |..|  |...|||..|.|:.|:        :.||.|..:.|||.|:                :|:
Zfish   780 HRRT--DVNLPPLSIEDDSLASIPFIDEPTSPSADLRARHVPASSV----------------VSS 826

  Fly    94 ASTESSCSPPIQGAVPPPKPSRHMAVQPLNSKSCRFPKLEECAHFHYERVQLGPLSVQLLDDKSE 158
            ....|  :|.:  ...|..|:....:..|.|.:|..||...                     :|.
Zfish   827 GGINS--APAV--ITSPASPTFTFPLNRLFSHNCSDPKSNR---------------------RSS 866

  Fly   159 HMGSSIASQSLGGDLPHSSLRSFSPESCWFIIRV---CPQRCEPFLIKRSFENMQLLDEM----- 215
            ::.:....:|...|   ..|.::..|.     ||   .|:|.:.|..:.|.:::...:|.     
Zfish   867 YLLAITTERSKSCD---EGLNAYREEG-----RVFSRLPKRVKSFFTEGSLDSLGAAEEARSKRH 923

  Fly   216 ----LHRCVY-DRKISGLRNMEELAAELPSESDVEYAVAKYLERFSKIASDSLTC-----GTILT 270
                |....| |.|..|..:.:::..|  ....|..|:..:...||.:.:.||..     ..:|.
Zfish   924 STSELGNISYSDVKREGWLHFKQIHTE--KGKKVGSAIWPWRRVFSVLRTHSLFLYKDKREAVLK 986

  Fly   271 WLQLDN----------KGRRLPLADGETQRTINTPAVGAAYGVR-------RYQAQAPDEINIEV 318
            ..||..          :|..:.:|..||:|         .:.:|       .|..||.|.     
Zfish   987 GAQLGGGAEDEQPISIRGCLVDIAYSETKR---------KHALRLTTQDFCEYLLQAEDR----- 1037

  Fly   319 GDMISVIDMPSPAESIWWRGKKSHLQKSLYEVGFFPQSCVATIGDKVPRNFPMPAPLVGHLDASP 383
            .||:.           |.|..:.:.:....|:||..|:.:    :|...::...:|.....|:||
Zfish  1038 EDMLE-----------WIRVIRDNSKTDNEELGFSRQALI----NKKLNDYRKQSPTGNKPDSSP 1087

  Fly   384 TKPVLRKHGKLIAFFRSFILSRPSR---------------------------RRLKQSG--IYRE 419
                 |.|.      .:|:||:|..                           ::.|::|  .:..
Zfish  1088 -----RVHR------MTFLLSKPDNSAPPRSPKHEAKDESSPPKSPWGINIMKKSKKAGPKAFGV 1141

  Fly   420 RVFNCDLSEHLLNSGQDIPMVLRSCAEFIENYGV-IDGIYRLSGITSNIQRLRRAFDEERVPDLG 483
            |:.:|   :..:|: :.||.::..|...:|:.|: ..||||:.|..:.:..|:...:  :..|:.
Zfish  1142 RLEDC---QPAVNN-KFIPQIVEICCGLVEDMGLEYTGIYRVPGNNAVVSSLQEQLN--KGVDIN 1200

  Fly   484 NPEMK-QDIHAVSSLLKMYFRELPNPLCTYQLYDNFVEAIQVKADEADERLRLMKETVLKLPPPH 547
            ..|.| ||::.||||||.:||:||.||.|...|::|::|.::  :.|.:|||.||:.:..||..:
Zfish  1201 ITEEKWQDLNVVSSLLKSFFRKLPEPLFTDDKYNDFIDANRM--ENASDRLRTMKKLIRDLPDHY 1263

  Fly   548 YRTLKYLAEHLYKVSQHHGRTGMTDKNLAIVWAPNLLRSPALESGGVAALRGVGVQAVVTEYLIR 612
            :.|||:|..||..|:.|..:..|..:|||:|:.|.|:|:.  |......:..:..:..:.|.||:
Zfish  1264 FHTLKFLVGHLKTVADHSEKNKMEPRNLALVFGPTLVRTS--EDNMTDMVTHMPDRYKIVETLIQ 1326

  Fly   613 NCHNIF------------DALDDHPA-----------RHSMVASAT------AAAANAAGGELRL 648
            :....|            |..|..||           |..|:..|:      :|.:..:.|..|.
Zfish  1327 HYTWFFCEEQDKDEKTPVDTEDVQPAPNIDHLLSNIGRTGMLGEASDSTNSDSAKSKGSWGSKRD 1391

  Fly   649 ESLTDCESLLVEQREQDQSLGVVERPKSLSTGGAKLISLEEAQERHSRVEGADLKQSLPISMLTS 713
            .:..|..:|.:        :..|.|.:.....|..|.|..:....|.           ||....|
Zfish  1392 FTAKDILTLSI--------MSAVTRKRRKRHNGRLLGSSTDDDSEHE-----------PIKSCIS 1437

  Fly   714 ASSNAASNIGSYIEVGGGPSSLPDKYHTVLSAPRSWQKRKPDKTPSWKSIFSRSQRQGNPDPGQK 778
            ...:..       |:|...|         ..|||:                     :|..|..::
Zfish  1438 EKDDLQ-------EMGQVAS---------FCAPRA---------------------EGEEDDDEE 1465

  Fly   779 ITTDVKDSVASRVSFVQASHAHASKELTKHDKPKSIELLETTSNERDPKPMDLCIRSNSIDSLRT 843
            ...|.::...:.....|.........::..::..|..||   |.|.:.|......||..:|..|:
Zfish  1466 EEDDEEEEEGAERQKAQEQKETVVPSISSTEEVTSTVLL---SEEEEQKSEVKGGRSWRLDDARS 1527

  Fly   844 VGHSRSVSHDSYFDLLQSPQRGHMTTCPSRELSELGLNFDREEPEMRIFSESESLVSSPRVGKEN 908
            :     ||..|....|            .|.|:..|...|.::....:.||:::           
Zfish  1528 I-----VSGYSTLSTL------------GRSLASEGRGEDADDEHSELVSETDN----------- 1564

  Fly   909 VPPASGSATRRIMRARPE--DFSSQTNSVNPSPK----------KQPRLNLLSPSSARTMPPPP- 960
               .||.|:|.:.:.|||  :.|:|.:..:|.|.          |.|     :||.:.|.|.|| 
Zfish  1565 ---ESGFASRSLTQERPEKPNRSNQNSHASPEPTAPQSFLYAHCKSP-----TPSGSATAPSPPS 1621

  Fly   961 -------------LSAPGTASSSCGHESGGAENCCKRYKLEDQLCDIQFIDCGT---------PE 1003
                         .|.|.|:|    :.|..::....|.....:|     |.|.|         ..
Zfish  1622 QHITTNPEDSAARSSTPSTSS----YSSSASQRLHNRSFNSHRL-----IQCDTLARRRTKADKA 1677

  Fly  1004 NVPTTQ-QQFASVEVHPPPKPARANQSPISSSNGASVGSSSSSTRYSYPSVQLGAKRKEQQDAKE 1067
            ..|:.. .:.:|.......:.:.|||.|.||.:.:|.....|......|...:|...|       
Zfish  1678 KAPSVDLSELSSSSAAEEDRQSGANQIPDSSPSPSSKAKGFSIRNECTPISMVGPGSK------- 1735

  Fly  1068 RFSYQGTFTQPGQKQESSAPRPVHSTNNGA----------------TLRKPR--------VEPVE 1108
                 |....|||   .|....|.:...|:                |.||.|        |.|.:
Zfish  1736 -----GCVLSPGQ---GSLADQVRARLMGSADDLCSVGLRKQLSPETRRKRRAWRRHTVVVSPTD 1792

  Fly  1109 DGQIKLHVPT--PTTPARSP--------RYSLLLC-DTESSDNSSAVNTPQY 1149
            ....|   ||  .|.|..||        |.|...| :||:.....||.|.::
Zfish  1793 CSDKK---PTVQSTKPLASPSPVEKQDVRESHPECSETEAPTARRAVPTSRF 1841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdGAPrNP_001260600.1 PX_domain 168..274 CDD:295365 24/123 (20%)
SH3_ARHGAP32_33 299..358 CDD:212769 13/65 (20%)
RhoGAP_CdGAP 420..613 CDD:239849 63/194 (32%)
FliJ 1322..1457 CDD:304890
arhgap23aXP_003198196.2 PDZ_signaling 116..223 CDD:238492
PH 936..1052 CDD:278594 26/142 (18%)
PH_ARHGAP21-like 938..1054 CDD:269955 25/142 (18%)
RhoGAP_ARHGAP21 1138..1332 CDD:239860 63/203 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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