Protein Alignment bsh and Hoxa5

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_077365.1
• Gene: Hoxa5 / 79241
• RGDID: 620609
• Length: 381
• Species: Rattus norvegicus
• Alignment Length: 286
• Identity: 80/286 - (27%)
• Similarity: 113/286 - (39%)
• Gaps: 58/286 - (20%)

  Fly    79 KSSRNAVKSARSAFAHD---NNPHKHPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYG 140
            |||.:..|...|.|.:.   ..|: .|....|....|...|.....:|:..|.:...||.|.|..
  Rat   103 KSSTHIKKQMSSYFVNSFCGRYPN-GPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLS 166

  Fly   141 KSMHSTPRSNHHSRHGTSHYNGDQISQQLGSGAAQHP-----PVPTTQPQPPPPPPLNGGSGASN 200
            .           .|.|:.|:...:.::...:||:..|     ..|.|....|||.||...:.|
  Rat   167 V-----------GRSGSGHFGSGERARSYAAGASAAPAEPRYSQPATSTHSPPPDPLPCSAVA-- 218

  Fly   201 GVLYPNAPYTDHGFLQMTLGYLSPSS--------------GTYKSVD---PYFLSQASLFGGA-- 246
                |:.....|...:.:||..|.:|              ||..:.:   |....||    ||
  Rat   219 ----PSPGSDSHHGGKNSLGNSSGASANAGSTHISSREGVGTASAAEEDAPASSEQA----GAQS 275

  Fly   247 ---PFFGAPGCVPEL---ALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERV 305
               |   ||...|::   ...|.:..:.:.....::|||.::..|...|||.|...|||:...|:
  Rat   276 EPSP---APPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRI 337

  Fly   306 ELATALGLSETQVKTWFQNRRMKHKK 331
            |:|.||.|||.|:|.||||||||.||
  Rat   338 EIAHALCLSERQIKIWFQNRRMKWKK 363

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	29/55 (53%)
Hoxa5	NP_077365.1	Homeodomain	307..363	CDD:459649	29/55 (53%)