DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsh and Nkx6-1

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_113925.1 Gene:Nkx6-1 / 65193 RGDID:69318 Length:365 Species:Rattus norvegicus


Alignment Length:400 Identity:101/400 - (25%)
Similarity:136/400 - (34%) Gaps:148/400 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 PADAHAHANATTPTHSKAAAMASATTMLTTKTPFSIEHILFQ---------NLNSASNNNNSSDT 66
            |..||.......|.....:::.|....|:..||..|..||.:         .|.|||.:.:||.:
  Rat    63 PLGAHNPGGLKPPAAGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSS 127

  Fly    67 NGIAANTNNYAPKSSRNAVKSARSAFAHDNNPHKHPSQHSHPPQSHPPASASASATATARSNQAA 131
            :..|                ||.||.|                     |:|:|:|.|.|.::..|
  Rat   128 SSSA----------------SATSASA---------------------AAAAAAAAAAAAASSPA 155

  Fly   132 SGYAGEDYGKSMHSTPRSNHHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQPQPPPPPPLNGGS 196
            ...||         .||.:..|                                ||||||     
  Rat   156 GLLAG---------LPRFSSLS--------------------------------PPPPPP----- 174

  Fly   197 GASNGVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGGAPFFGAPG-------- 253
                |:                  |.|||:....:|..|....|.|.|..|.|. ||        
  Rat   175 ----GL------------------YFSPSAAAVAAVGRYPKPLAELPGRTPIFW-PGVMQSPPWR 216

  Fly   254 -----CVPELALGLGMGVNAL-RHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALG 312
                 |.|.      .|...| :..:|:..|..||..|:..|||.||..:||:.|||..||.:||
  Rat   217 DARLACTPH------QGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLG 275

  Fly   313 LSETQVKTWFQNRRMK-HKKQLRRRDNANEPVDFSRSEPGKQPGEATSSSGDSKHGKLNPGSVGG 376
            ::|:|||.||||||.| .||.......|.:..|   ||..:..|.:.:...|..:.|        
  Rat   276 MTESQVKVWFQNRRTKWRKKHAAEMATAKKKQD---SETERLKGTSENEEDDDDYNK-------- 329

  Fly   377 TPTQPTSEQQ 386
             |..|.|:.:
  Rat   330 -PLDPNSDDE 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 29/56 (52%)
Nkx6-1NP_113925.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 20/88 (23%)
Repressor domain. /evidence=ECO:0000250 102..269 64/278 (23%)
Homeodomain 236..294 CDD:459649 30/57 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 11/55 (20%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365 9/43 (21%)

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