Protein Alignment bsh and hoxc11b

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: XP_009298848.2
• Gene: hoxc11b / 570925
• ZFINID: ZDB-GENE-000822-3
• Length: 306
• Species: Danio rerio
• Alignment Length: 367
• Identity: 82/367 - (22%)
• Similarity: 120/367 - (32%)
• Gaps: 151/367 - (41%)

  Fly    50 LFQNLN-----SASNNNNSSDTNGIAANTNN-------YAPKSSRNA-----VKSARSAFAHDNN 97
            :|.::|     |.|....:|:....|:..:|       |.|:.|..:     .:|.:..:::..|
Zfish     1 MFNSVNIGNFCSQSRKERTSEFGERASCASNLYLPSTYYVPEFSTVSSFLPQAQSRQITYSYSTN 65

  Fly    98 PHKHPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMH--STPRS----------- 149
            ..:.|.....|.:.:|      |.....|.|. :|.||.||.   :|  ..|.|
Zfish    66 FTQVPQVRDLPFELNP------SGKWHHRGNY-SSCYAEEDL---VHRDCLPPSATMTEMLMKNE 120

  Fly   150 ---NHHSRH------GTSHYNG-----------DQISQQLGSGAAQHPPVPTTQPQPPPPPPLNG 194
               |||..|      ||..|:.           |:......|||                   :|
Zfish   121 NVYNHHHYHPAINHPGTGFYSSIGKTNVLPQSFDRFLDCAHSGA-------------------DG 166

  Fly   195 GS-------GAS---------NGVLYPNAPYTDHGFLQM------TLGYLSPSSGTYK------- 230
            ||       |:|         :.||...|    .|..::      |.|....||||..
Zfish   167 GSEGNCLQKGSSGKPESASQVSSVLRSTA----DGEKELECEKNTTSGSFETSSGTKNDNQTKSG 227

  Fly   231 -SVDPYFLSQASLFGGAPFFGAPGCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFE 294
             |..|                                      |.||.|..::..|:..||:.|.
Zfish   228 HSTTP--------------------------------------RMRKKRCPYTKFQIRELEREFF 254

  Fly   295 GQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRR 336
            ...|::..:|::|:..|.|::.|||.||||||||.||..|.|
Zfish   255 FNVYINKEKRLQLSRILNLTDRQVKIWFQNRRMKEKKLSRDR 296

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	23/55 (42%)
hoxc11b	XP_009298848.2	None