DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsh and meox2a

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:XP_017206696.1 Gene:meox2a / 556898 ZFINID:ZDB-GENE-080613-1 Length:302 Species:Danio rerio


Alignment Length:410 Identity:101/410 - (24%)
Similarity:136/410 - (33%) Gaps:151/410 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 IEHILFQNLNSASNNNNSSDTNGIAANTNNYAPKSSRNAVKSARSAFAHDNNPHKHPSQHSHPPQ 110
            ::|.||..|.|.                  :||.      ::...|||....| :|.|.:.....
Zfish     1 MDHTLFGCLRSP------------------HAPP------QAVHPAFALHGRP-EHLSSYPDLSS 40

  Fly   111 SHPPASASASATATARSNQAASGYAGEDYG------KSMHSTPRSNHHSRHGTSHYNGDQISQQL 169
            |.||::.            ..|||.|||.|      :.:..:.:.:||..|   |::   ::||.
Zfish    41 SSPPSTC------------IVSGYPGEDGGLFGGHQRGLSVSQQQHHHHHH---HHH---LAQQG 87

  Fly   170 GSGAAQHPPVPTTQPQPPPPPPLNGGSGASNGVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDP 234
            |    .|      .||.....|...|                   :::.||...|.||: ..|.|
Zfish    88 G----WH------LPQSSSASPSAAG-------------------VRLGLGISGPDSGS-SDVGP 122

  Fly   235 YFLSQASLFGGAPFFGA-----PGCVPELALGLGMGVNAL-------RHCRR------------- 274
               ...||....|..||     ..|||    |...|.:.:       |:.:|             
Zfish   123 ---GGPSLCASTPSLGAGVPSGASCVP----GGDFGRHTMSPAEAEKRNSKRRSDSSESQDGNYK 180

  Fly   275 -------RKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQ 332
                   ||.||.|:..|:..||..|....||:...|.|:|..|.|:|.|||.||||||||.|  
Zfish   181 SDVSSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWK-- 243

  Fly   333 LRRRDNANEPVDFSRSEPGKQPGEATSSS-GDSKHGKLNPGSVGGTPTQPTSEQQLQMCLMQQGY 396
                          |.:.|:|...|.... .:.|.|.|.|....|.                .|.
Zfish   244 --------------RVKGGQQGAVAREKELVNVKKGTLLPSEFSGI----------------AGL 278

  Fly   397 STDDYSDLEADSGDEDNSSD 416
            .|.|......||.|.|.||:
Zfish   279 HTPDSLLNNEDSQDSDQSSE 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 28/55 (51%)
meox2aXP_017206696.1 Homeodomain 188..244 CDD:459649 29/71 (41%)

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