Protein Alignment bsh and hoxa1

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_001008017.1
• Gene: hoxa1 / 493379
• XenbaseID: XB-GENE-480737
• Length: 323
• Species: Xenopus tropicalis
• Alignment Length: 373
• Identity: 91/373 - (24%)
• Similarity: 128/373 - (34%)
• Gaps: 131/373 - (35%)

  Fly    51 FQNLNSASNNNNSSDT----NGIAANTNNYAPKSSRNAVKSARSAFAHDNN---PHKHPS----- 103
            ||:...::||.||.|.    .|:..:::   |....:..    .||.|.||   .:.|.|
 Frog    37 FQSCAVSANNCNSDDRFVVGRGVQISSH---PHHHHHQA----GAFQHHNNLGMSYTHTSCGSNY 94

  Fly   104 --QHSHPPQSHPPASASASATA-----TARSNQAASGYAGEDYGKSMHSTPRSNHHSRHG----- 156
              |:..|..||.|.:..|..:|     ....|.|:|......:...:..:....||| :|
 Frog    95 GMQNFSPGYSHFPINQEADVSAGFPQSVYSGNIASSVVQHHQHQSYIEGSAHYIHHS-YGPDQNI 158

  Fly   157 -TSHYNGDQISQQLGSGAAQHPPVPTTQPQPPPP---------PPLNGGSGASNGVLYPNAPYTD 211
             .::||.:..|..:........|...|.|.|...         ||..|.:|             :
 Frog   159 SVANYNNNVSSLHISQREVCRSPSSETSPGPAQTFDWMKVKRNPPKTGKAG-------------E 210

  Fly   212 HGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGGAPFFGAPGCVPELALGLGMGVNALRHCRRRK 276
            :|                             |.|.|                           ..
 Frog   211 YG-----------------------------FAGQP---------------------------NT 219

  Fly   277 ARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANE 341
            |||.|:..||:.|||.|...:||:...|||:|.||.|:|||||.||||||||.||
 Frog   220 ARTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQVKIWFQNRRMKQKK---------- 274

  Fly   342 PVDFSRSEPGKQPGEATSSSG-DSKHGKL----NPGSVGGTPTQPTSE 384
                 |.:.|..|...::|:| |.|..:|    |......:|...||:
 Frog   275 -----REKEGLLPISPSASTGSDEKSEELSEKSNSSPCAPSPASSTSD 317

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	32/55 (58%)
hoxa1	NP_001008017.1	Homeodomain	221..274	CDD:459649	31/52 (60%)