Protein Alignment bsh and Scr

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 542
• Identity: 115/542 - (21%)
• Similarity: 175/542 - (32%)
• Gaps: 196/542 - (36%)

  Fly    52 QNLNSASN-----NNNSSDTNGIAANTNNYAPKSSRNAVKSARSAF---AHDNNPHK---HPSQH 105
            |.:|...|     |:::..:.|.|..:....|....|..:.:..|.   |:|..|..   .|:.:
  Fly    23 QQMNPQQNHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLY 87

  Fly   106 SHPPQSHPPASASASATATARSNQAASGYAGE----DY----------GKSMHSTPRSNHHSRHG 156
            .:.||:|             .:||||.|..|.    ||          .:......:.:.|:...
  Fly    88 PNTPQAH-------------YANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAA 139

  Fly   157 TSHYNGDQISQQLGSGAAQHPPVPTTQPQ---------PPPPPPLNGGSGASNGVLYPNAPYTDH 212
            .:.....|::||      |||.....|.|         .|..|..:||.|.|......|:..:::
  Fly   140 VAAQQQQQLAQQ------QHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNN 198

  Fly   213 GFLQMTLGYLSPSSGTYKSVDPYFLSQASL-----------------------------FGGAPF 248
            ...|   ...||...:.:.:.|. ||.:|:                             ..|:..
  Fly   199 NNSQ---SLASPQDLSTRDISPK-LSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGV 259

  Fly   249 FGAPGCV-----------------------------------PEL-----ALGLGMG-VNALRHC 272
            .|.||.|                                   |::     .:.||.. |||....
  Fly   260 SGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGET 324

  Fly   273 RRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD 337
            :|:  ||.::..|...|||.|...|||:...|:|:|.||.|:|.|:|.||||||||.||:.:...
  Fly   325 KRQ--RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 387

  Fly   338 ----------------------------NANEPVDFSRS---------EPGKQPGEATSSSG--D 363
                                        :|.:...||.:         ||.:....|:::||  .
  Fly   388 MNIVPYHMGPYGHPYHQFDIHPSQFAHLSAXDAWHFSGTGXRLNQLYQEPYQTAAAASAASGYQS 452

  Fly   364 SKHGKLNPGSVG-----GTP-----------------TQPTSEQQLQMCLMQQGYSTDDYSDL-- 404
            ...|.:..||||     |.|                 ....|..|...|:.   |..:..|.:
  Fly   453 QDGGPIGGGSVGVGGGAGGPGSLANGGSNGSGPNSLFASAASSSQAPDCIK---YPQEFXSQVII 514

  Fly   405 -EADSGDEDNSSDVDIVGDAKL 425
             :.....:|||.|.:...|.||
  Fly   515 RQQHQQQQDNSMDRNQERDLKL 536

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	27/55 (49%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	28/57 (49%)